Results 61 - 80 of 115 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13948 | 3' | -59.6 | NC_003521.1 | + | 128929 | 0.68 | 0.720663 |
Target: 5'- cUCUcGgGCCUCAUcagcaaggagacGGUGucGGCGCCGGCc -3' miRNA: 3'- uAGA-CgCGGGGUA------------UUAC--CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 34696 | 0.68 | 0.720663 |
Target: 5'- -cCUGCGCgUCGUAGgcgaagacGGCGCCGuGCg -3' miRNA: 3'- uaGACGCGgGGUAUUac------CCGCGGC-CG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 35168 | 0.68 | 0.711122 |
Target: 5'- -gCUGCGCUUCGa---GGGCGCCuGCg -3' miRNA: 3'- uaGACGCGGGGUauuaCCCGCGGcCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 69442 | 0.68 | 0.711122 |
Target: 5'- uGUCUaGCGCgCCGcGGcGGGCGUCGGg -3' miRNA: 3'- -UAGA-CGCGgGGUaUUaCCCGCGGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 136909 | 0.68 | 0.711122 |
Target: 5'- -cCUGCGUCUgAUGugggaccagGGGCGCCaGCg -3' miRNA: 3'- uaGACGCGGGgUAUua-------CCCGCGGcCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 150479 | 0.68 | 0.705368 |
Target: 5'- ---aGCGCCUgGUGggGcccuucagcuuuuacGGCGCCGGCg -3' miRNA: 3'- uagaCGCGGGgUAUuaC---------------CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 70695 | 0.68 | 0.70152 |
Target: 5'- cGUCUGCGCCgCAagcu--GCGUCGGCg -3' miRNA: 3'- -UAGACGCGGgGUauuaccCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 163727 | 0.68 | 0.70152 |
Target: 5'- -cCUGCGUCgg--GAUGagcGGCGCCGGCg -3' miRNA: 3'- uaGACGCGGgguaUUAC---CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 141346 | 0.68 | 0.70152 |
Target: 5'- uUCUGCGguUCCCAcgGGUGcGGCGgCGGUc -3' miRNA: 3'- uAGACGC--GGGGUa-UUAC-CCGCgGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 106137 | 0.68 | 0.70152 |
Target: 5'- cAUCUGCGCCCUgAUcGUGGGCacgcGCCa-- -3' miRNA: 3'- -UAGACGCGGGG-UAuUACCCG----CGGccg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 3704 | 0.68 | 0.70152 |
Target: 5'- -cCUGUGCCCUc-----GGCGUCGGCa -3' miRNA: 3'- uaGACGCGGGGuauuacCCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 85945 | 0.68 | 0.70152 |
Target: 5'- -cCUGCGgCgCGUGcUGGaCGCCGGCu -3' miRNA: 3'- uaGACGCgGgGUAUuACCcGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 103576 | 0.69 | 0.692832 |
Target: 5'- cGUCaGCGCCUgcuggaguaccggcgCGUGGUGgccuacgacgagacGGCGCCGGCc -3' miRNA: 3'- -UAGaCGCGGG---------------GUAUUAC--------------CCGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 85754 | 0.69 | 0.691864 |
Target: 5'- ---cGgGUCCCGgcggGGGCGCgGGCa -3' miRNA: 3'- uagaCgCGGGGUauuaCCCGCGgCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 3676 | 0.69 | 0.682162 |
Target: 5'- gGUCUGagugGCCCCAUccccgGAUGccGGCGUCGGg -3' miRNA: 3'- -UAGACg---CGGGGUA-----UUAC--CCGCGGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 53397 | 0.69 | 0.682162 |
Target: 5'- uUCUGCaGCUCCuugc-GGGCGUCGGg -3' miRNA: 3'- uAGACG-CGGGGuauuaCCCGCGGCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 63073 | 0.69 | 0.682162 |
Target: 5'- ---cGCGaCCCCGUAcagcuGCGCCGGCg -3' miRNA: 3'- uagaCGC-GGGGUAUuacc-CGCGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 238363 | 0.69 | 0.682162 |
Target: 5'- cGUC-GCGUaCCCAUAGcgGGGCGCgGGg -3' miRNA: 3'- -UAGaCGCG-GGGUAUUa-CCCGCGgCCg -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 76195 | 0.69 | 0.672422 |
Target: 5'- ---gGCGCCaCAgGAUGGGCcagaagcccGCCGGCa -3' miRNA: 3'- uagaCGCGGgGUaUUACCCG---------CGGCCG- -5' |
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13948 | 3' | -59.6 | NC_003521.1 | + | 115655 | 0.69 | 0.672422 |
Target: 5'- uGUCgGCGCCCCAguggcgGGUGaagaaGGCGgCCaGGCg -3' miRNA: 3'- -UAGaCGCGGGGUa-----UUAC-----CCGC-GG-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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