miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 112695 0.67 0.793789
Target:  5'- -cCUGgGCCgCC-UGAgcGGGCGUCGGUc -3'
miRNA:   3'- uaGACgCGG-GGuAUUa-CCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 77863 0.67 0.793789
Target:  5'- ---cGCGCCCgGUGacGUGGGUucgGCCacGGCg -3'
miRNA:   3'- uagaCGCGGGgUAU--UACCCG---CGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 196759 0.67 0.787675
Target:  5'- cGUCUGCuGCCCCGgccggcgcgaccgcGGGCG-CGGUa -3'
miRNA:   3'- -UAGACG-CGGGGUauua----------CCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 223164 0.67 0.785035
Target:  5'- ---aGgGCCaCCGUGGUGccccGGUGCUGGCg -3'
miRNA:   3'- uagaCgCGG-GGUAUUAC----CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 152883 0.67 0.785035
Target:  5'- -cCUGCGCCgCC-UGGUgaccaaccaGGGCGCCGa- -3'
miRNA:   3'- uaGACGCGG-GGuAUUA---------CCCGCGGCcg -5'
13948 3' -59.6 NC_003521.1 + 139314 0.67 0.776154
Target:  5'- gAUCUGCGgCgCCGUuuUGGaGCGCaGGUg -3'
miRNA:   3'- -UAGACGCgG-GGUAuuACC-CGCGgCCG- -5'
13948 3' -59.6 NC_003521.1 + 122208 0.67 0.776154
Target:  5'- ---cGCGaCUCCAUGcugccugcgagcGcGGGUGCCGGCg -3'
miRNA:   3'- uagaCGC-GGGGUAU------------UaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 213916 0.67 0.76806
Target:  5'- uGUCUggaGCGCggugcgaccaagaguCUUAUAaggcagagacgcggGUGGGCGCCGGCu -3'
miRNA:   3'- -UAGA---CGCG---------------GGGUAU--------------UACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 166751 0.67 0.767155
Target:  5'- ---gGCGCCCCGcugGAUGGcGCuGCUGcGCg -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC-CG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 196862 0.67 0.766249
Target:  5'- cGUCUGCGuaCCCCGcuGUuggcgagcaggucGGGCGUCGGg -3'
miRNA:   3'- -UAGACGC--GGGGUauUA-------------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 74377 0.67 0.758045
Target:  5'- -aCgGCGCCC----AUGGGCGUCGcGCa -3'
miRNA:   3'- uaGaCGCGGGguauUACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 54903 0.67 0.758045
Target:  5'- -gCUGCGCaCCGUuugcaGGaucaGCGCCGGCg -3'
miRNA:   3'- uaGACGCGgGGUAuua--CC----CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 74181 0.67 0.758045
Target:  5'- -aCUGCGCCgCGgcgcccGGCGCgCGGCc -3'
miRNA:   3'- uaGACGCGGgGUauuac-CCGCG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 225840 0.67 0.758045
Target:  5'- gGUCcacgGCGCgCUCGUGGUGgugcgggcacaGGUGCCGGUg -3'
miRNA:   3'- -UAGa---CGCG-GGGUAUUAC-----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 49489 0.68 0.748833
Target:  5'- -aCUGCGa--CAUAcUGGGCGCCaGGUa -3'
miRNA:   3'- uaGACGCgggGUAUuACCCGCGG-CCG- -5'
13948 3' -59.6 NC_003521.1 + 222740 0.68 0.739526
Target:  5'- cAUCUcGCGCgCCGUc-UGGGCuaCGGCc -3'
miRNA:   3'- -UAGA-CGCGgGGUAuuACCCGcgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 27792 0.68 0.739526
Target:  5'- cGUCUaCGCCaCC---GUGGGCGCCucgGGCc -3'
miRNA:   3'- -UAGAcGCGG-GGuauUACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 129027 0.68 0.739526
Target:  5'- ---cGCGCUCCAU----GGCGUCGGCc -3'
miRNA:   3'- uagaCGCGGGGUAuuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 121878 0.68 0.730134
Target:  5'- -gCUGCGCCagGUGGUGaGCGCCaGCc -3'
miRNA:   3'- uaGACGCGGggUAUUACcCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 223221 0.68 0.730134
Target:  5'- -cCUGCGUgCUgAUGAUGGGUaaGCaCGGCa -3'
miRNA:   3'- uaGACGCGgGG-UAUUACCCG--CG-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.