miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 234551 0.66 0.819217
Target:  5'- gGUCUGCgucccGCCCCAgggcaGGGCGacgaggUGGCg -3'
miRNA:   3'- -UAGACG-----CGGGGUauua-CCCGCg-----GCCG- -5'
13948 3' -59.6 NC_003521.1 + 64265 0.66 0.819217
Target:  5'- -cCUGCaGCUCCucuagGGGCagaaaGCCGGCc -3'
miRNA:   3'- uaGACG-CGGGGuauuaCCCG-----CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 215179 0.66 0.819217
Target:  5'- gAUCUGcCGCCUgAUGucGUGGucacGCGCCaGCa -3'
miRNA:   3'- -UAGAC-GCGGGgUAU--UACC----CGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 91100 0.66 0.819217
Target:  5'- cGUCUGCGCCugcgCCGgucgGGGauuccCCGGCa -3'
miRNA:   3'- -UAGACGCGG----GGUauuaCCCgc---GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 131029 0.66 0.819217
Target:  5'- cUCcaCGUCCCGUcuccUGGGCGgCGGCg -3'
miRNA:   3'- uAGacGCGGGGUAuu--ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 127767 0.66 0.819217
Target:  5'- ---aGCGucuCCUCGUAGUcGGGCGgCGGCc -3'
miRNA:   3'- uagaCGC---GGGGUAUUA-CCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 127353 0.66 0.819217
Target:  5'- gAUCUGCacGCCCUcc-GUGGuGCG-CGGCa -3'
miRNA:   3'- -UAGACG--CGGGGuauUACC-CGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 204115 0.66 0.819217
Target:  5'- -aCUGCGCCuCCAcc-UGcucgggccaGGCGCCGGa -3'
miRNA:   3'- uaGACGCGG-GGUauuAC---------CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 85866 0.66 0.816734
Target:  5'- cUCUucGCGCCCUcgguggaguccgugGUGGUggugggGGGCGgCGGCg -3'
miRNA:   3'- uAGA--CGCGGGG--------------UAUUA------CCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 222988 0.66 0.810887
Target:  5'- -cCUGCGCCCacuugGUAuggcgGUGGGggucgucgucCGCCGGUc -3'
miRNA:   3'- uaGACGCGGGg----UAU-----UACCC----------GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 121031 0.66 0.810887
Target:  5'- -cCUG-GCCCCA--GUGGcagGCCGGCa -3'
miRNA:   3'- uaGACgCGGGGUauUACCcg-CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 173239 0.66 0.810887
Target:  5'- gAUCaUGgGCaUCAUGAUGGGCGUgggaGGCa -3'
miRNA:   3'- -UAG-ACgCGgGGUAUUACCCGCGg---CCG- -5'
13948 3' -59.6 NC_003521.1 + 227121 0.66 0.810887
Target:  5'- -gCUGgaGCCCU--GAUGGGCcugcCCGGCg -3'
miRNA:   3'- uaGACg-CGGGGuaUUACCCGc---GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 201330 0.67 0.804968
Target:  5'- gAUCUGCGCCagcaggaaccgcuCCGggcuguuccagaaguUGAggcucggcgGGGCGCCGGg -3'
miRNA:   3'- -UAGACGCGG-------------GGU---------------AUUa--------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 239985 0.67 0.804968
Target:  5'- gAUCUGCGCCagcaggaaccgcuCCGggcuguuccagaaguUGAggcucggcgGGGCGCCGGg -3'
miRNA:   3'- -UAGACGCGG-------------GGU---------------AUUa--------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 144971 0.67 0.802409
Target:  5'- uUCgagaCGCCCCAcaUGAU-GGCGgCGGCg -3'
miRNA:   3'- uAGac--GCGGGGU--AUUAcCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 227210 0.67 0.802409
Target:  5'- ---gGCGCCgCCAUGGauuucgccgggGGGC-CCGGCg -3'
miRNA:   3'- uagaCGCGG-GGUAUUa----------CCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103065 0.67 0.802409
Target:  5'- -gCUGcCGCCCgAgcugGcGGcCGCCGGCg -3'
miRNA:   3'- uaGAC-GCGGGgUauuaC-CC-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 178038 0.67 0.802409
Target:  5'- -----aGCCCCAguacaucuUGGGCGCCacgGGCa -3'
miRNA:   3'- uagacgCGGGGUauu-----ACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 77863 0.67 0.793789
Target:  5'- ---cGCGCCCgGUGacGUGGGUucgGCCacGGCg -3'
miRNA:   3'- uagaCGCGGGgUAU--UACCCG---CGG--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.