miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 69442 0.68 0.711122
Target:  5'- uGUCUaGCGCgCCGcGGcGGGCGUCGGg -3'
miRNA:   3'- -UAGA-CGCGgGGUaUUaCCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 70695 0.68 0.70152
Target:  5'- cGUCUGCGCCgCAagcu--GCGUCGGCg -3'
miRNA:   3'- -UAGACGCGGgGUauuaccCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 71070 0.66 0.843238
Target:  5'- -gCUGCGCCUCuuc--GGGCcGCUGuGCg -3'
miRNA:   3'- uaGACGCGGGGuauuaCCCG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 73961 0.71 0.536108
Target:  5'- -gCUGCGCUCCAcgaagcucuUGAgcagcgccuUGGGCGCCucgGGCg -3'
miRNA:   3'- uaGACGCGGGGU---------AUU---------ACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 74112 0.75 0.340169
Target:  5'- -aCUGCGCgacgCCCA---UGGGCGCCGuGCa -3'
miRNA:   3'- uaGACGCG----GGGUauuACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 74181 0.67 0.758045
Target:  5'- -aCUGCGCCgCGgcgcccGGCGCgCGGCc -3'
miRNA:   3'- uaGACGCGGgGUauuac-CCGCG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 74377 0.67 0.758045
Target:  5'- -aCgGCGCCC----AUGGGCGUCGcGCa -3'
miRNA:   3'- uaGaCGCGGGguauUACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 76195 0.69 0.672422
Target:  5'- ---gGCGCCaCAgGAUGGGCcagaagcccGCCGGCa -3'
miRNA:   3'- uagaCGCGGgGUaUUACCCG---------CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 76483 0.72 0.471241
Target:  5'- --gUGCGCgCCCAg---GGcGUGCCGGCg -3'
miRNA:   3'- uagACGCG-GGGUauuaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 77610 0.75 0.340169
Target:  5'- cGUCaccggGCGCgCCCGUGAc-GGCGCCGGCc -3'
miRNA:   3'- -UAGa----CGCG-GGGUAUUacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 77863 0.67 0.793789
Target:  5'- ---cGCGCCCgGUGacGUGGGUucgGCCacGGCg -3'
miRNA:   3'- uagaCGCGGGgUAU--UACCCG---CGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 78532 0.66 0.843238
Target:  5'- cUCUcccCGuUCCCGUGAUGagacugugucGGCGCCGGUg -3'
miRNA:   3'- uAGAc--GC-GGGGUAUUAC----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 83901 0.66 0.827389
Target:  5'- uAUCUGCagaagGUCUCGgagGUGGGCuaCGGCa -3'
miRNA:   3'- -UAGACG-----CGGGGUau-UACCCGcgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 85754 0.69 0.691864
Target:  5'- ---cGgGUCCCGgcggGGGCGCgGGCa -3'
miRNA:   3'- uagaCgCGGGGUauuaCCCGCGgCCG- -5'
13948 3' -59.6 NC_003521.1 + 85866 0.66 0.816734
Target:  5'- cUCUucGCGCCCUcgguggaguccgugGUGGUggugggGGGCGgCGGCg -3'
miRNA:   3'- uAGA--CGCGGGG--------------UAUUA------CCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 85945 0.68 0.70152
Target:  5'- -cCUGCGgCgCGUGcUGGaCGCCGGCu -3'
miRNA:   3'- uaGACGCgGgGUAUuACCcGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 88902 0.66 0.819217
Target:  5'- cUCUGCGCCUCGc--UGGGCugugacCCGGa -3'
miRNA:   3'- uAGACGCGGGGUauuACCCGc-----GGCCg -5'
13948 3' -59.6 NC_003521.1 + 91100 0.66 0.819217
Target:  5'- cGUCUGCGCCugcgCCGgucgGGGauuccCCGGCa -3'
miRNA:   3'- -UAGACGCGG----GGUauuaCCCgc---GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 101162 0.66 0.840123
Target:  5'- gGUCUGCGUCCCucuccucagacGGCGuccgcgcCCGGCg -3'
miRNA:   3'- -UAGACGCGGGGuauuac-----CCGC-------GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 101470 0.73 0.430849
Target:  5'- --gUGCGCCUCGUAGUGGcGCGUgaggugcucgagcagCGGCg -3'
miRNA:   3'- uagACGCGGGGUAUUACC-CGCG---------------GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.