miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 102584 0.7 0.613609
Target:  5'- -aCUGCGUCUCGgggcuGGCGCUGGCc -3'
miRNA:   3'- uaGACGCGGGGUauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103065 0.67 0.802409
Target:  5'- -gCUGcCGCCCgAgcugGcGGcCGCCGGCg -3'
miRNA:   3'- uaGAC-GCGGGgUauuaC-CC-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103139 0.66 0.83381
Target:  5'- cUCUGCGCcucgcuacgcacggCCCAgaccuacgccacGGGCGCCcuGGCg -3'
miRNA:   3'- uAGACGCG--------------GGGUauua--------CCCGCGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 103204 0.71 0.545645
Target:  5'- ---aGCGCUCCAUgaccugGAUGaGGuCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUA------UUAC-CC-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103576 0.69 0.692832
Target:  5'- cGUCaGCGCCUgcuggaguaccggcgCGUGGUGgccuacgacgagacGGCGCCGGCc -3'
miRNA:   3'- -UAGaCGCGGG---------------GUAUUAC--------------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 103873 0.7 0.594033
Target:  5'- gAUCaGCGCCgaCAggggGAUGGGCuGCCGcGCg -3'
miRNA:   3'- -UAGaCGCGGg-GUa---UUACCCG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 106137 0.68 0.70152
Target:  5'- cAUCUGCGCCCUgAUcGUGGGCacgcGCCa-- -3'
miRNA:   3'- -UAGACGCGGGG-UAuUACCCG----CGGccg -5'
13948 3' -59.6 NC_003521.1 + 109495 0.76 0.318721
Target:  5'- ---gGCGCUCCAgcgAGUGGucGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 112454 0.71 0.564876
Target:  5'- ---gGCGgCCC-UGGUGGGCGCgccCGGCg -3'
miRNA:   3'- uagaCGCgGGGuAUUACCCGCG---GCCG- -5'
13948 3' -59.6 NC_003521.1 + 112695 0.67 0.793789
Target:  5'- -cCUGgGCCgCC-UGAgcGGGCGUCGGUc -3'
miRNA:   3'- uaGACgCGG-GGuAUUa-CCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 113336 0.72 0.498592
Target:  5'- cGUCUGCGCCUCGUAGcccggaaGGUGCUGGa -3'
miRNA:   3'- -UAGACGCGGGGUAUUac-----CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 115655 0.69 0.672422
Target:  5'- uGUCgGCGCCCCAguggcgGGUGaagaaGGCGgCCaGGCg -3'
miRNA:   3'- -UAGaCGCGGGGUa-----UUAC-----CCGC-GG-CCG- -5'
13948 3' -59.6 NC_003521.1 + 116870 0.66 0.822505
Target:  5'- -cCUGCGCgCgCA--GUGGcgcggcugcggcggcGCGCCGGCg -3'
miRNA:   3'- uaGACGCGgG-GUauUACC---------------CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 118918 0.78 0.237598
Target:  5'- cGUCgGCGCCgCGgcGUGGGCGgCGGCg -3'
miRNA:   3'- -UAGaCGCGGgGUauUACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 121031 0.66 0.810887
Target:  5'- -cCUG-GCCCCA--GUGGcagGCCGGCa -3'
miRNA:   3'- uaGACgCGGGGUauUACCcg-CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 121878 0.68 0.730134
Target:  5'- -gCUGCGCCagGUGGUGaGCGCCaGCc -3'
miRNA:   3'- uaGACGCGGggUAUUACcCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 121984 0.66 0.827389
Target:  5'- ---cGCGCCugaCCGUGucuaaccuaucGUGGGCG-CGGCa -3'
miRNA:   3'- uagaCGCGG---GGUAU-----------UACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 122208 0.67 0.776154
Target:  5'- ---cGCGaCUCCAUGcugccugcgagcGcGGGUGCCGGCg -3'
miRNA:   3'- uagaCGC-GGGGUAU------------UaCCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 123434 0.75 0.362644
Target:  5'- -aCUGCGCCgCGaGAcGGuGCGCCGGCc -3'
miRNA:   3'- uaGACGCGGgGUaUUaCC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 127353 0.66 0.819217
Target:  5'- gAUCUGCacGCCCUcc-GUGGuGCG-CGGCa -3'
miRNA:   3'- -UAGACG--CGGGGuauUACC-CGCgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.