miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 109495 0.76 0.318721
Target:  5'- ---gGCGCUCCAgcgAGUGGucGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 118918 0.78 0.237598
Target:  5'- cGUCgGCGCCgCGgcGUGGGCGgCGGCg -3'
miRNA:   3'- -UAGaCGCGGgGUauUACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 38466 0.84 0.101119
Target:  5'- cGUCUGgGCUCUGgcgGUGGGCGCCGGCg -3'
miRNA:   3'- -UAGACgCGGGGUau-UACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 102584 0.7 0.613609
Target:  5'- -aCUGCGUCUCGgggcuGGCGCUGGCc -3'
miRNA:   3'- uaGACGCGGGGUauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 223817 0.7 0.633236
Target:  5'- -cCUGCGCCgCCGccaccgcGGGCGCCuGCu -3'
miRNA:   3'- uaGACGCGG-GGUauua---CCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 70695 0.68 0.70152
Target:  5'- cGUCUGCGCCgCAagcu--GCGUCGGCg -3'
miRNA:   3'- -UAGACGCGGgGUauuaccCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 163727 0.68 0.70152
Target:  5'- -cCUGCGUCgg--GAUGagcGGCGCCGGCg -3'
miRNA:   3'- uaGACGCGGgguaUUAC---CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 141346 0.68 0.70152
Target:  5'- uUCUGCGguUCCCAcgGGUGcGGCGgCGGUc -3'
miRNA:   3'- uAGACGC--GGGGUa-UUAC-CCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 63073 0.69 0.682162
Target:  5'- ---cGCGaCCCCGUAcagcuGCGCCGGCg -3'
miRNA:   3'- uagaCGC-GGGGUAUuacc-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 238363 0.69 0.682162
Target:  5'- cGUC-GCGUaCCCAUAGcgGGGCGCgGGg -3'
miRNA:   3'- -UAGaCGCG-GGGUAUUa-CCCGCGgCCg -5'
13948 3' -59.6 NC_003521.1 + 53397 0.69 0.682162
Target:  5'- uUCUGCaGCUCCuugc-GGGCGUCGGg -3'
miRNA:   3'- uAGACG-CGGGGuauuaCCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 209548 0.69 0.672422
Target:  5'- --aUGCGCCCg--GcgGGGUGgCGGCg -3'
miRNA:   3'- uagACGCGGGguaUuaCCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 115655 0.69 0.672422
Target:  5'- uGUCgGCGCCCCAguggcgGGUGaagaaGGCGgCCaGGCg -3'
miRNA:   3'- -UAGaCGCGGGGUa-----UUAC-----CCGC-GG-CCG- -5'
13948 3' -59.6 NC_003521.1 + 76195 0.69 0.672422
Target:  5'- ---gGCGCCaCAgGAUGGGCcagaagcccGCCGGCa -3'
miRNA:   3'- uagaCGCGGgGUaUUACCCG---------CGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 137460 0.69 0.662652
Target:  5'- uAUC-GCGCaCCGacgAGUggaaGGGCGCCGGCg -3'
miRNA:   3'- -UAGaCGCGgGGUa--UUA----CCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 224429 0.69 0.643052
Target:  5'- ---gGCGCUgCGUGGUGGGCGagCGGUc -3'
miRNA:   3'- uagaCGCGGgGUAUUACCCGCg-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 218015 0.69 0.643052
Target:  5'- -gCUGaugaaGaCCCCGUucuUGGGCGgCGGCg -3'
miRNA:   3'- uaGACg----C-GGGGUAuu-ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 187465 0.7 0.634218
Target:  5'- gGUCUGUcgGCCCCuccgccgccGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGGGGuauuacc--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 24664 0.66 0.8509
Target:  5'- uUCUaUGCUCCGcGGgcccGGCGCCGGCu -3'
miRNA:   3'- uAGAcGCGGGGUaUUac--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 144500 0.86 0.076409
Target:  5'- gAUCUGCGCgCCCAUGAUGagcaggcaGGCGUCGGCg -3'
miRNA:   3'- -UAGACGCG-GGGUAUUAC--------CCGCGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.