miRNA display CGI


Results 41 - 60 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 63073 0.69 0.682162
Target:  5'- ---cGCGaCCCCGUAcagcuGCGCCGGCg -3'
miRNA:   3'- uagaCGC-GGGGUAUuacc-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 85754 0.69 0.691864
Target:  5'- ---cGgGUCCCGgcggGGGCGCgGGCa -3'
miRNA:   3'- uagaCgCGGGGUauuaCCCGCGgCCG- -5'
13948 3' -59.6 NC_003521.1 + 103576 0.69 0.692832
Target:  5'- cGUCaGCGCCUgcuggaguaccggcgCGUGGUGgccuacgacgagacGGCGCCGGCc -3'
miRNA:   3'- -UAGaCGCGGG---------------GUAUUAC--------------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 70695 0.68 0.70152
Target:  5'- cGUCUGCGCCgCAagcu--GCGUCGGCg -3'
miRNA:   3'- -UAGACGCGGgGUauuaccCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 163727 0.68 0.70152
Target:  5'- -cCUGCGUCgg--GAUGagcGGCGCCGGCg -3'
miRNA:   3'- uaGACGCGGgguaUUAC---CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 141346 0.68 0.70152
Target:  5'- uUCUGCGguUCCCAcgGGUGcGGCGgCGGUc -3'
miRNA:   3'- uAGACGC--GGGGUa-UUAC-CCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 106137 0.68 0.70152
Target:  5'- cAUCUGCGCCCUgAUcGUGGGCacgcGCCa-- -3'
miRNA:   3'- -UAGACGCGGGG-UAuUACCCG----CGGccg -5'
13948 3' -59.6 NC_003521.1 + 3704 0.68 0.70152
Target:  5'- -cCUGUGCCCUc-----GGCGUCGGCa -3'
miRNA:   3'- uaGACGCGGGGuauuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 85945 0.68 0.70152
Target:  5'- -cCUGCGgCgCGUGcUGGaCGCCGGCu -3'
miRNA:   3'- uaGACGCgGgGUAUuACCcGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 150479 0.68 0.705368
Target:  5'- ---aGCGCCUgGUGggGcccuucagcuuuuacGGCGCCGGCg -3'
miRNA:   3'- uagaCGCGGGgUAUuaC---------------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 35168 0.68 0.711122
Target:  5'- -gCUGCGCUUCGa---GGGCGCCuGCg -3'
miRNA:   3'- uaGACGCGGGGUauuaCCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 136909 0.68 0.711122
Target:  5'- -cCUGCGUCUgAUGugggaccagGGGCGCCaGCg -3'
miRNA:   3'- uaGACGCGGGgUAUua-------CCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 69442 0.68 0.711122
Target:  5'- uGUCUaGCGCgCCGcGGcGGGCGUCGGg -3'
miRNA:   3'- -UAGA-CGCGgGGUaUUaCCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 34696 0.68 0.720663
Target:  5'- -cCUGCGCgUCGUAGgcgaagacGGCGCCGuGCg -3'
miRNA:   3'- uaGACGCGgGGUAUUac------CCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 128929 0.68 0.720663
Target:  5'- cUCUcGgGCCUCAUcagcaaggagacGGUGucGGCGCCGGCc -3'
miRNA:   3'- uAGA-CgCGGGGUA------------UUAC--CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 121878 0.68 0.730134
Target:  5'- -gCUGCGCCagGUGGUGaGCGCCaGCc -3'
miRNA:   3'- uaGACGCGGggUAUUACcCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 223221 0.68 0.730134
Target:  5'- -cCUGCGUgCUgAUGAUGGGUaaGCaCGGCa -3'
miRNA:   3'- uaGACGCGgGG-UAUUACCCG--CG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 129027 0.68 0.739526
Target:  5'- ---cGCGCUCCAU----GGCGUCGGCc -3'
miRNA:   3'- uagaCGCGGGGUAuuacCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 27792 0.68 0.739526
Target:  5'- cGUCUaCGCCaCC---GUGGGCGCCucgGGCc -3'
miRNA:   3'- -UAGAcGCGG-GGuauUACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 222740 0.68 0.739526
Target:  5'- cAUCUcGCGCgCCGUc-UGGGCuaCGGCc -3'
miRNA:   3'- -UAGA-CGCGgGGUAuuACCCGcgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.