miRNA display CGI


Results 21 - 40 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 213916 0.67 0.76806
Target:  5'- uGUCUggaGCGCggugcgaccaagaguCUUAUAaggcagagacgcggGUGGGCGCCGGCu -3'
miRNA:   3'- -UAGA---CGCG---------------GGGUAU--------------UACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 209548 0.69 0.672422
Target:  5'- --aUGCGCCCg--GcgGGGUGgCGGCg -3'
miRNA:   3'- uagACGCGGGguaUuaCCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 204115 0.66 0.819217
Target:  5'- -aCUGCGCCuCCAcc-UGcucgggccaGGCGCCGGa -3'
miRNA:   3'- uaGACGCGG-GGUauuAC---------CCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 201330 0.67 0.804968
Target:  5'- gAUCUGCGCCagcaggaaccgcuCCGggcuguuccagaaguUGAggcucggcgGGGCGCCGGg -3'
miRNA:   3'- -UAGACGCGG-------------GGU---------------AUUa--------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 196862 0.67 0.766249
Target:  5'- cGUCUGCGuaCCCCGcuGUuggcgagcaggucGGGCGUCGGg -3'
miRNA:   3'- -UAGACGC--GGGGUauUA-------------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 196759 0.67 0.787675
Target:  5'- cGUCUGCuGCCCCGgccggcgcgaccgcGGGCG-CGGUa -3'
miRNA:   3'- -UAGACG-CGGGGUauua----------CCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 194919 0.66 0.8509
Target:  5'- cAUCUGCGUgggagUgGUGAUGGGCuGCaCGGUg -3'
miRNA:   3'- -UAGACGCGg----GgUAUUACCCG-CG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 191849 0.66 0.834605
Target:  5'- cUCaGCGCCUCGUcuaagauguugucGAuguccguccaacUGGGCGgCGGCg -3'
miRNA:   3'- uAGaCGCGGGGUA-------------UU------------ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 191285 0.74 0.402334
Target:  5'- -gCUGcCGCCCgaAUGGcUGGGCGCCGuGCa -3'
miRNA:   3'- uaGAC-GCGGGg-UAUU-ACCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 190499 0.66 0.843238
Target:  5'- gAUCUGCuGCagCCCGUGAUGGG-GUCGa- -3'
miRNA:   3'- -UAGACG-CG--GGGUAUUACCCgCGGCcg -5'
13948 3' -59.6 NC_003521.1 + 187465 0.7 0.634218
Target:  5'- gGUCUGUcgGCCCCuccgccgccGCGCCGGCg -3'
miRNA:   3'- -UAGACG--CGGGGuauuacc--CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 187238 0.73 0.462293
Target:  5'- uUCg--GCCaCCAgcAUGGGUGCCGGCg -3'
miRNA:   3'- uAGacgCGG-GGUauUACCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 178038 0.67 0.802409
Target:  5'- -----aGCCCCAguacaucuUGGGCGCCacgGGCa -3'
miRNA:   3'- uagacgCGGGGUauu-----ACCCGCGG---CCG- -5'
13948 3' -59.6 NC_003521.1 + 173239 0.66 0.810887
Target:  5'- gAUCaUGgGCaUCAUGAUGGGCGUgggaGGCa -3'
miRNA:   3'- -UAG-ACgCGgGGUAUUACCCGCGg---CCG- -5'
13948 3' -59.6 NC_003521.1 + 170784 0.66 0.842462
Target:  5'- cGUCUugGCGCCCCAcgucccguUGGauccccaacaaguGaCGCCGGCa -3'
miRNA:   3'- -UAGA--CGCGGGGUauu-----ACC-------------C-GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 166751 0.67 0.767155
Target:  5'- ---gGCGCCCCGcugGAUGGcGCuGCUGcGCg -3'
miRNA:   3'- uagaCGCGGGGUa--UUACC-CG-CGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 166491 0.66 0.835398
Target:  5'- ---aGCGCCauCCAgcg-GGGCGCCGcGUc -3'
miRNA:   3'- uagaCGCGG--GGUauuaCCCGCGGC-CG- -5'
13948 3' -59.6 NC_003521.1 + 163727 0.68 0.70152
Target:  5'- -cCUGCGUCgg--GAUGagcGGCGCCGGCg -3'
miRNA:   3'- uaGACGCGGgguaUUAC---CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 163352 0.66 0.843238
Target:  5'- gAUCccCGCCUCAUGAaccgccagaaGGaGCGCCGGCc -3'
miRNA:   3'- -UAGacGCGGGGUAUUa---------CC-CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 153366 0.75 0.355039
Target:  5'- cGUCgcgcGCGCCCggcggCGUGGUGGGCcCCGGCc -3'
miRNA:   3'- -UAGa---CGCGGG-----GUAUUACCCGcGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.