miRNA display CGI


Results 1 - 20 of 115 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 3' -59.6 NC_003521.1 + 239985 0.67 0.804968
Target:  5'- gAUCUGCGCCagcaggaaccgcuCCGggcuguuccagaaguUGAggcucggcgGGGCGCCGGg -3'
miRNA:   3'- -UAGACGCGG-------------GGU---------------AUUa--------CCCGCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 238627 0.74 0.386129
Target:  5'- ---cGCGCCCCGcuAUGgguacgcgacGGCGCCGGCc -3'
miRNA:   3'- uagaCGCGGGGUauUAC----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 238363 0.69 0.682162
Target:  5'- cGUC-GCGUaCCCAUAGcgGGGCGCgGGg -3'
miRNA:   3'- -UAGaCGCG-GGGUAUUa-CCCGCGgCCg -5'
13948 3' -59.6 NC_003521.1 + 234551 0.66 0.819217
Target:  5'- gGUCUGCgucccGCCCCAgggcaGGGCGacgaggUGGCg -3'
miRNA:   3'- -UAGACG-----CGGGGUauua-CCCGCg-----GCCG- -5'
13948 3' -59.6 NC_003521.1 + 227210 0.67 0.802409
Target:  5'- ---gGCGCCgCCAUGGauuucgccgggGGGC-CCGGCg -3'
miRNA:   3'- uagaCGCGG-GGUAUUa----------CCCGcGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 227121 0.66 0.810887
Target:  5'- -gCUGgaGCCCU--GAUGGGCcugcCCGGCg -3'
miRNA:   3'- uaGACg-CGGGGuaUUACCCGc---GGCCG- -5'
13948 3' -59.6 NC_003521.1 + 225840 0.67 0.758045
Target:  5'- gGUCcacgGCGCgCUCGUGGUGgugcgggcacaGGUGCCGGUg -3'
miRNA:   3'- -UAGa---CGCG-GGGUAUUAC-----------CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 224429 0.69 0.643052
Target:  5'- ---gGCGCUgCGUGGUGGGCGagCGGUc -3'
miRNA:   3'- uagaCGCGGgGUAUUACCCGCg-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 223817 0.7 0.633236
Target:  5'- -cCUGCGCCgCCGccaccgcGGGCGCCuGCu -3'
miRNA:   3'- uaGACGCGG-GGUauua---CCCGCGGcCG- -5'
13948 3' -59.6 NC_003521.1 + 223385 0.71 0.564876
Target:  5'- cAUCgcgGCGCCCCGacgcgggccGUGuGGCGCCccGGCg -3'
miRNA:   3'- -UAGa--CGCGGGGUau-------UAC-CCGCGG--CCG- -5'
13948 3' -59.6 NC_003521.1 + 223221 0.68 0.730134
Target:  5'- -cCUGCGUgCUgAUGAUGGGUaaGCaCGGCa -3'
miRNA:   3'- uaGACGCGgGG-UAUUACCCG--CG-GCCG- -5'
13948 3' -59.6 NC_003521.1 + 223164 0.67 0.785035
Target:  5'- ---aGgGCCaCCGUGGUGccccGGUGCUGGCg -3'
miRNA:   3'- uagaCgCGG-GGUAUUAC----CCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 222988 0.66 0.810887
Target:  5'- -cCUGCGCCCacuugGUAuggcgGUGGGggucgucgucCGCCGGUc -3'
miRNA:   3'- uaGACGCGGGg----UAU-----UACCC----------GCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 222740 0.68 0.739526
Target:  5'- cAUCUcGCGCgCCGUc-UGGGCuaCGGCc -3'
miRNA:   3'- -UAGA-CGCGgGGUAuuACCCGcgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 222178 0.7 0.613609
Target:  5'- ---gGCaGCCCCGaagGGUGGcgccgcGCGCCGGCa -3'
miRNA:   3'- uagaCG-CGGGGUa--UUACC------CGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218727 0.75 0.362644
Target:  5'- -aCUGCGCCCaCGgcGU-GGUGCCGGCc -3'
miRNA:   3'- uaGACGCGGG-GUauUAcCCGCGGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218015 0.69 0.643052
Target:  5'- -gCUGaugaaGaCCCCGUucuUGGGCGgCGGCg -3'
miRNA:   3'- uaGACg----C-GGGGUAuu-ACCCGCgGCCG- -5'
13948 3' -59.6 NC_003521.1 + 218001 0.69 0.662652
Target:  5'- uGUCUGCGUCCguggccggGcgGGGgGCCGGg -3'
miRNA:   3'- -UAGACGCGGGgua-----UuaCCCgCGGCCg -5'
13948 3' -59.6 NC_003521.1 + 217526 0.66 0.827389
Target:  5'- -cCUGCuCCUCGUccgucaugguGGUGGGCGCgGGg -3'
miRNA:   3'- uaGACGcGGGGUA----------UUACCCGCGgCCg -5'
13948 3' -59.6 NC_003521.1 + 215179 0.66 0.819217
Target:  5'- gAUCUGcCGCCUgAUGucGUGGucacGCGCCaGCa -3'
miRNA:   3'- -UAGAC-GCGGGgUAU--UACC----CGCGGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.