miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 74094 0.66 0.958078
Target:  5'- uGGCCGACaUGCUGCGcgacUGcGCGAcgcccaugGGCGc -3'
miRNA:   3'- uUUGGCUGgACGACGU----AC-CGCU--------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 78852 0.66 0.950324
Target:  5'- -cGCCGACg-GC-GC-UGGCGggGUGg -3'
miRNA:   3'- uuUGGCUGgaCGaCGuACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 81797 0.66 0.941667
Target:  5'- --cUCGACCaUGCUGUAguUGGCGAucaGGUa -3'
miRNA:   3'- uuuGGCUGG-ACGACGU--ACCGCU---UCGc -5'
13948 5' -55.7 NC_003521.1 + 82228 0.66 0.941667
Target:  5'- -uACCgcgaGACCUGCagccuuaacUGCAUGGUGAcGGUGa -3'
miRNA:   3'- uuUGG----CUGGACG---------ACGUACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 84959 0.69 0.834746
Target:  5'- gAGGCCGGCCUggaggugugcacgcaGCUGC-UGGCGcuGCu -3'
miRNA:   3'- -UUUGGCUGGA---------------CGACGuACCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 85600 0.71 0.727866
Target:  5'- -cGCCGGCCUGCgGCGggccgcgggccaaGGCuGGAGCGa -3'
miRNA:   3'- uuUGGCUGGACGaCGUa------------CCG-CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 85669 0.68 0.87036
Target:  5'- -cACCGgagGCCUGCUGCc-GGCcAAGCGc -3'
miRNA:   3'- uuUGGC---UGGACGACGuaCCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 87746 0.66 0.950324
Target:  5'- gAAGCCcgaGACCaGCUGCGgacaggUGGCGcAGGCc -3'
miRNA:   3'- -UUUGG---CUGGaCGACGU------ACCGC-UUCGc -5'
13948 5' -55.7 NC_003521.1 + 87876 0.66 0.94611
Target:  5'- -cGCUGGCCagGCcGU-UGGCGAAGUGg -3'
miRNA:   3'- uuUGGCUGGa-CGaCGuACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 92648 0.66 0.954312
Target:  5'- gGAGCCGGCggaGCgacgGCAgcgGGCG-AGCGg -3'
miRNA:   3'- -UUUGGCUGga-CGa---CGUa--CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 97044 0.68 0.897768
Target:  5'- -cGCCGcCgCUGCUGCcggcGGCGAcGGCGa -3'
miRNA:   3'- uuUGGCuG-GACGACGua--CCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 98403 0.74 0.585539
Target:  5'- ---gCGGCgCUGCUGCuguuauuguccggugGUGGCGggGCGg -3'
miRNA:   3'- uuugGCUG-GACGACG---------------UACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 100202 0.66 0.941667
Target:  5'- cGGCCGugUaccGCUGCAggucguaggccGGCGAGGUGg -3'
miRNA:   3'- uUUGGCugGa--CGACGUa----------CCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 103032 0.66 0.949084
Target:  5'- uAGCCGuACCcagacaugcgcaggUGCUGCAgacagGGCGGGuGCGc -3'
miRNA:   3'- uUUGGC-UGG--------------ACGACGUa----CCGCUU-CGC- -5'
13948 5' -55.7 NC_003521.1 + 105879 0.67 0.92695
Target:  5'- cGAGCaCGcCCUGCUGCA--GCGccuGAGCGg -3'
miRNA:   3'- -UUUG-GCuGGACGACGUacCGC---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 110318 0.7 0.788148
Target:  5'- cGGACUGACgCUGCUGUc-GGCGggGUc -3'
miRNA:   3'- -UUUGGCUG-GACGACGuaCCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 113882 0.66 0.94611
Target:  5'- uGACgCGGCUgaGCUGCAUGaGCaGAGCGc -3'
miRNA:   3'- uUUG-GCUGGa-CGACGUAC-CGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 116368 0.7 0.78543
Target:  5'- gAGGCCGAgCUGCUGCugccgcgcgacGUGGUGGaacguugguuggguAGCGg -3'
miRNA:   3'- -UUUGGCUgGACGACG-----------UACCGCU--------------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 116866 0.68 0.897768
Target:  5'- ---aCGACCUGCgcgcGCAgUGGCGcGGCu -3'
miRNA:   3'- uuugGCUGGACGa---CGU-ACCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 117259 0.66 0.936994
Target:  5'- -cGCCGACCaGCUGCuUGuCGuAGCGc -3'
miRNA:   3'- uuUGGCUGGaCGACGuACcGCuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.