miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 54934 0.66 0.956972
Target:  5'- cAGCuCGGCCUGCgUGCAcggccaggacaucgUGcGCGAgAGCGa -3'
miRNA:   3'- uUUG-GCUGGACG-ACGU--------------AC-CGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 54998 0.66 0.958078
Target:  5'- uGGCCGACUUGUaggGCuuaaGGCGcAGCGc -3'
miRNA:   3'- uUUGGCUGGACGa--CGua--CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 56094 0.69 0.839621
Target:  5'- aAGGCCGGCCUGCcGCGcuGCGAcugguucgAGCGc -3'
miRNA:   3'- -UUUGGCUGGACGaCGUacCGCU--------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 56246 0.71 0.741416
Target:  5'- uGGACCGGcugcggccCCUGCacaucgGCGUGGUGggGCu -3'
miRNA:   3'- -UUUGGCU--------GGACGa-----CGUACCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 57539 0.72 0.712187
Target:  5'- -cACCGACCUGCUGC-UGG-GucGCu -3'
miRNA:   3'- uuUGGCUGGACGACGuACCgCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 58041 0.67 0.932088
Target:  5'- -cGCgCGugUUGCUGC-UGGCGGccacccgauacGGCGa -3'
miRNA:   3'- uuUG-GCugGACGACGuACCGCU-----------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 59345 0.66 0.958078
Target:  5'- uGAGCCacGCCacGCUGCA-GGCGgcGCGc -3'
miRNA:   3'- -UUUGGc-UGGa-CGACGUaCCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 59610 0.75 0.531981
Target:  5'- -cGCCG-CCUGCaGCGUGGCGuGGCu -3'
miRNA:   3'- uuUGGCuGGACGaCGUACCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 62722 0.73 0.662258
Target:  5'- uAGACgGGCC-GCUGCuUGGCGuAGGCGu -3'
miRNA:   3'- -UUUGgCUGGaCGACGuACCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 63945 0.69 0.862974
Target:  5'- cAACCGGCUgagcguggaGCUGC-UGGCGcGGCGc -3'
miRNA:   3'- uUUGGCUGGa--------CGACGuACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 63992 0.66 0.938891
Target:  5'- uGGCCGGCUUucugccccuagaggaGCUGCA-GGCGcugGAGCGc -3'
miRNA:   3'- uUUGGCUGGA---------------CGACGUaCCGC---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 64760 0.69 0.847598
Target:  5'- -cGCCGGCCgGCgcgGCAccgGGCGAucccaAGCGc -3'
miRNA:   3'- uuUGGCUGGaCGa--CGUa--CCGCU-----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 66051 0.66 0.954312
Target:  5'- gGGGCCGGCCgaaGUUGUccGGCGGcGGUGu -3'
miRNA:   3'- -UUUGGCUGGa--CGACGuaCCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 71014 0.69 0.855385
Target:  5'- uGAUCGGCCgcggcgcGCUGCAgcUGGaCGAAGUGc -3'
miRNA:   3'- uUUGGCUGGa------CGACGU--ACC-GCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 71388 0.66 0.958078
Target:  5'- -cGCCGACgCcGUcguccGCGUGaGCGAGGCGg -3'
miRNA:   3'- uuUGGCUG-GaCGa----CGUAC-CGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 72844 0.69 0.831459
Target:  5'- gGAGCCG-CCgGUUGCgAUGGCGAcGCu -3'
miRNA:   3'- -UUUGGCuGGaCGACG-UACCGCUuCGc -5'
13948 5' -55.7 NC_003521.1 + 73092 0.71 0.760451
Target:  5'- cAGGCCGucgcggugaGCCUGCUGCugcugGUGGUGGuaGGCGu -3'
miRNA:   3'- -UUUGGC---------UGGACGACG-----UACCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 73115 0.66 0.949913
Target:  5'- -cACCGugGCCacggaggUGCUGCAcGGCGGgggcAGCGg -3'
miRNA:   3'- uuUGGC--UGG-------ACGACGUaCCGCU----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 73440 0.66 0.94611
Target:  5'- -uGCCGGCCaGCUccgcgccaggucGCA-GGCcGAGGCGg -3'
miRNA:   3'- uuUGGCUGGaCGA------------CGUaCCG-CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 73770 0.67 0.910134
Target:  5'- -cGCCGACCUGCUucucgaagcaGCGgUGGaugaaGAAGUGc -3'
miRNA:   3'- uuUGGCUGGACGA----------CGU-ACCg----CUUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.