miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 187861 0.79 0.347017
Target:  5'- -cACCG-CCUGUUGCAUGGCGGucaccaccucgGGCGg -3'
miRNA:   3'- uuUGGCuGGACGACGUACCGCU-----------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 169688 0.66 0.936994
Target:  5'- aGGACCG-CCUGCUgGCcuacGGCGugcuGGCGu -3'
miRNA:   3'- -UUUGGCuGGACGA-CGua--CCGCu---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 166205 0.68 0.904065
Target:  5'- cGACaCGGCgCUGCUGCGcgagacggUGGCGGcGGUGg -3'
miRNA:   3'- uUUG-GCUG-GACGACGU--------ACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 166117 0.66 0.958078
Target:  5'- -cGCgGGCCUGCUuCAgGGCGGccGGCa -3'
miRNA:   3'- uuUGgCUGGACGAcGUaCCGCU--UCGc -5'
13948 5' -55.7 NC_003521.1 + 159822 0.71 0.741416
Target:  5'- cGGACCGGCCgugaggcGCUGCGcggaGGCGcGAGCGu -3'
miRNA:   3'- -UUUGGCUGGa------CGACGUa---CCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 156670 0.71 0.760451
Target:  5'- uAGgUGACCaGCgGCAgggUGGCGAAGCGg -3'
miRNA:   3'- uUUgGCUGGaCGaCGU---ACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 156167 0.77 0.447225
Target:  5'- uAGCCGGCCUGCUcGCAgGGCGu-GCGc -3'
miRNA:   3'- uUUGGCUGGACGA-CGUaCCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 155383 0.66 0.941667
Target:  5'- --uUCGACCUGCccgucuauUGCGUGGUcaacGAGCGc -3'
miRNA:   3'- uuuGGCUGGACG--------ACGUACCGc---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 153857 0.76 0.456286
Target:  5'- cAACCuGGCgCUGCUGCugcagGUGGUGGAGCGg -3'
miRNA:   3'- uUUGG-CUG-GACGACG-----UACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 153381 0.68 0.904065
Target:  5'- aAAGCCG-CCUGCUGCcGUcgcgcgcgcccGGCGgcGUGg -3'
miRNA:   3'- -UUUGGCuGGACGACG-UA-----------CCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 152350 0.66 0.941667
Target:  5'- -cGCCGACgCUGCUcugggGCcgGcCGggGCGg -3'
miRNA:   3'- uuUGGCUG-GACGA-----CGuaCcGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 152313 0.69 0.85307
Target:  5'- uGACgGACCUgcgggugaagcaccGCUGCGgccUGGUGAAGCc -3'
miRNA:   3'- uUUGgCUGGA--------------CGACGU---ACCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 150307 0.66 0.94611
Target:  5'- uGACC-ACCcggUGCaGCGUGGCGucGCGc -3'
miRNA:   3'- uUUGGcUGG---ACGaCGUACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 150234 0.66 0.958078
Target:  5'- --cCCGugCUGCUGCugaccacGGcCGAGGgGg -3'
miRNA:   3'- uuuGGCugGACGACGua-----CC-GCUUCgC- -5'
13948 5' -55.7 NC_003521.1 + 149819 0.73 0.621833
Target:  5'- uGACCGACCUGCUGCAgcuGCaacAGCa -3'
miRNA:   3'- uUUGGCUGGACGACGUac-CGcu-UCGc -5'
13948 5' -55.7 NC_003521.1 + 149018 0.68 0.883814
Target:  5'- cAGACCGACCccaGCgGCGUGGagauucuCGAGGCc -3'
miRNA:   3'- -UUUGGCUGGa--CGaCGUACC-------GCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 145025 0.66 0.941667
Target:  5'- -cGCCGACgC-GCUggaucGCGUGGCcGAGCGg -3'
miRNA:   3'- uuUGGCUG-GaCGA-----CGUACCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 144752 0.7 0.805942
Target:  5'- gGAGCUGACCcgGCUGC-UGGCGGucugGGaCGa -3'
miRNA:   3'- -UUUGGCUGGa-CGACGuACCGCU----UC-GC- -5'
13948 5' -55.7 NC_003521.1 + 142117 0.67 0.92695
Target:  5'- cGugCGACCUGgaGCuggaGGCGGAcgacGCGg -3'
miRNA:   3'- uUugGCUGGACgaCGua--CCGCUU----CGC- -5'
13948 5' -55.7 NC_003521.1 + 141444 0.66 0.941667
Target:  5'- uGGACCG-CCucagagaggUGCUGCAggugGuGCGAAGCc -3'
miRNA:   3'- -UUUGGCuGG---------ACGACGUa---C-CGCUUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.