miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 116368 0.7 0.78543
Target:  5'- gAGGCCGAgCUGCUGCugccgcgcgacGUGGUGGaacguugguuggguAGCGg -3'
miRNA:   3'- -UUUGGCUgGACGACG-----------UACCGCU--------------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 110318 0.7 0.788148
Target:  5'- cGGACUGACgCUGCUGUc-GGCGggGUc -3'
miRNA:   3'- -UUUGGCUG-GACGACGuaCCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 135492 0.7 0.788148
Target:  5'- aGAACUuccACCUGCUGCugGUGGaCGAGGCc -3'
miRNA:   3'- -UUUGGc--UGGACGACG--UACC-GCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 144752 0.7 0.805942
Target:  5'- gGAGCUGACCcgGCUGC-UGGCGGucugGGaCGa -3'
miRNA:   3'- -UUUGGCUGGa-CGACGuACCGCU----UC-GC- -5'
13948 5' -55.7 NC_003521.1 + 201523 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5'
13948 5' -55.7 NC_003521.1 + 30896 0.7 0.805942
Target:  5'- aGGGCCGAgCUGaaCUGCGgcaGGCGAgAGCGg -3'
miRNA:   3'- -UUUGGCUgGAC--GACGUa--CCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 239792 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5'
13948 5' -55.7 NC_003521.1 + 33516 0.7 0.814612
Target:  5'- -cGCCGGCCUGCUGgCGUGuGCc-AGCu -3'
miRNA:   3'- uuUGGCUGGACGAC-GUAC-CGcuUCGc -5'
13948 5' -55.7 NC_003521.1 + 35217 0.7 0.82312
Target:  5'- uGGCCGACCU-CUGCGUG-CGccGCGa -3'
miRNA:   3'- uUUGGCUGGAcGACGUACcGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 220520 0.69 0.831459
Target:  5'- uGGCCu-CCuggUGCUGCAUGGCGccGGCGa -3'
miRNA:   3'- uUUGGcuGG---ACGACGUACCGCu-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 72844 0.69 0.831459
Target:  5'- gGAGCCG-CCgGUUGCgAUGGCGAcGCu -3'
miRNA:   3'- -UUUGGCuGGaCGACG-UACCGCUuCGc -5'
13948 5' -55.7 NC_003521.1 + 84959 0.69 0.834746
Target:  5'- gAGGCCGGCCUggaggugugcacgcaGCUGC-UGGCGcuGCu -3'
miRNA:   3'- -UUUGGCUGGA---------------CGACGuACCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 140488 0.69 0.839621
Target:  5'- gGAGCCG-CCaucaUGCUGCAcGGCGAcucGGCc -3'
miRNA:   3'- -UUUGGCuGG----ACGACGUaCCGCU---UCGc -5'
13948 5' -55.7 NC_003521.1 + 56094 0.69 0.839621
Target:  5'- aAGGCCGGCCUGCcGCGcuGCGAcugguucgAGCGc -3'
miRNA:   3'- -UUUGGCUGGACGaCGUacCGCU--------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 64760 0.69 0.847598
Target:  5'- -cGCCGGCCgGCgcgGCAccgGGCGAucccaAGCGc -3'
miRNA:   3'- uuUGGCUGGaCGa--CGUa--CCGCU-----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 205289 0.69 0.847598
Target:  5'- aAGGCCGACUacgGCgGCGUgGGCGAgaaccuGGCGg -3'
miRNA:   3'- -UUUGGCUGGa--CGaCGUA-CCGCU------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 152313 0.69 0.85307
Target:  5'- uGACgGACCUgcgggugaagcaccGCUGCGgccUGGUGAAGCc -3'
miRNA:   3'- uUUGgCUGGA--------------CGACGU---ACCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 71014 0.69 0.855385
Target:  5'- uGAUCGGCCgcggcgcGCUGCAgcUGGaCGAAGUGc -3'
miRNA:   3'- uUUGGCUGGa------CGACGU--ACC-GCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 129913 0.69 0.862974
Target:  5'- cGGCCGcgcGCCUGCUGCGcgaacaccUGGcCGAgacGGCGc -3'
miRNA:   3'- uUUGGC---UGGACGACGU--------ACC-GCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 63945 0.69 0.862974
Target:  5'- cAACCGGCUgagcguggaGCUGC-UGGCGcGGCGc -3'
miRNA:   3'- uUUGGCUGGa--------CGACGuACCGCuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.