miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 130855 0.66 0.946542
Target:  5'- uAGCUGACCUGCaGCuugaaguacagcaccUGGCgcuuGAAGCGg -3'
miRNA:   3'- uUUGGCUGGACGaCGu--------------ACCG----CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 197020 0.66 0.94611
Target:  5'- -cGCCGGCCgggGCaGCAgacGGUGcAGGCGc -3'
miRNA:   3'- uuUGGCUGGa--CGaCGUa--CCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 87876 0.66 0.94611
Target:  5'- -cGCUGGCCagGCcGU-UGGCGAAGUGg -3'
miRNA:   3'- uuUGGCUGGa-CGaCGuACCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 37412 0.66 0.94611
Target:  5'- -cACgGGCCUGaCcGUGUGGCGcGGCGc -3'
miRNA:   3'- uuUGgCUGGAC-GaCGUACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 150307 0.66 0.94611
Target:  5'- uGACC-ACCcggUGCaGCGUGGCGucGCGc -3'
miRNA:   3'- uUUGGcUGG---ACGaCGUACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 113882 0.66 0.94611
Target:  5'- uGACgCGGCUgaGCUGCAUGaGCaGAGCGc -3'
miRNA:   3'- uUUG-GCUGGa-CGACGUAC-CGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 73440 0.66 0.94611
Target:  5'- -uGCCGGCCaGCUccgcgccaggucGCA-GGCcGAGGCGg -3'
miRNA:   3'- uuUGGCUGGaCGA------------CGUaCCG-CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 82228 0.66 0.941667
Target:  5'- -uACCgcgaGACCUGCagccuuaacUGCAUGGUGAcGGUGa -3'
miRNA:   3'- uuUGG----CUGGACG---------ACGUACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 81797 0.66 0.941667
Target:  5'- --cUCGACCaUGCUGUAguUGGCGAucaGGUa -3'
miRNA:   3'- uuuGGCUGG-ACGACGU--ACCGCU---UCGc -5'
13948 5' -55.7 NC_003521.1 + 141444 0.66 0.941667
Target:  5'- uGGACCG-CCucagagaggUGCUGCAggugGuGCGAAGCc -3'
miRNA:   3'- -UUUGGCuGG---------ACGACGUa---C-CGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 152350 0.66 0.941667
Target:  5'- -cGCCGACgCUGCUcugggGCcgGcCGggGCGg -3'
miRNA:   3'- uuUGGCUG-GACGA-----CGuaCcGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 145025 0.66 0.941667
Target:  5'- -cGCCGACgC-GCUggaucGCGUGGCcGAGCGg -3'
miRNA:   3'- uuUGGCUG-GaCGA-----CGUACCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 155383 0.66 0.941667
Target:  5'- --uUCGACCUGCccgucuauUGCGUGGUcaacGAGCGc -3'
miRNA:   3'- uuuGGCUGGACG--------ACGUACCGc---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 100202 0.66 0.941667
Target:  5'- cGGCCGugUaccGCUGCAggucguaggccGGCGAGGUGg -3'
miRNA:   3'- uUUGGCugGa--CGACGUa----------CCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 63992 0.66 0.938891
Target:  5'- uGGCCGGCUUucugccccuagaggaGCUGCA-GGCGcugGAGCGc -3'
miRNA:   3'- uUUGGCUGGA---------------CGACGUaCCGC---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 33556 0.66 0.936994
Target:  5'- cGGCCGGCCUGaC-GCA-GGCacgaGAAGCGc -3'
miRNA:   3'- uUUGGCUGGAC-GaCGUaCCG----CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 219358 0.66 0.936994
Target:  5'- uAGGCCG-CCaGCUGCAcgccGUGAAGCGc -3'
miRNA:   3'- -UUUGGCuGGaCGACGUac--CGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 169688 0.66 0.936994
Target:  5'- aGGACCG-CCUGCUgGCcuacGGCGugcuGGCGu -3'
miRNA:   3'- -UUUGGCuGGACGA-CGua--CCGCu---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 47910 0.66 0.936994
Target:  5'- gGAGCCGGCg-GgaGC--GGCGGAGCGu -3'
miRNA:   3'- -UUUGGCUGgaCgaCGuaCCGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 117259 0.66 0.936994
Target:  5'- -cGCCGACCaGCUGCuUGuCGuAGCGc -3'
miRNA:   3'- uuUGGCUGGaCGACGuACcGCuUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.