miRNA display CGI


Results 41 - 60 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 126983 0.67 0.932088
Target:  5'- -cGCCGGCCgccccGCUGCcgcugcccgacGUGGCGguGCc -3'
miRNA:   3'- uuUGGCUGGa----CGACG-----------UACCGCuuCGc -5'
13948 5' -55.7 NC_003521.1 + 58041 0.67 0.932088
Target:  5'- -cGCgCGugUUGCUGC-UGGCGGccacccgauacGGCGa -3'
miRNA:   3'- uuUG-GCugGACGACGuACCGCU-----------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 137289 0.67 0.932088
Target:  5'- ---gCGACCUggaGCUGCGggUGGCGcGGCu -3'
miRNA:   3'- uuugGCUGGA---CGACGU--ACCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 105879 0.67 0.92695
Target:  5'- cGAGCaCGcCCUGCUGCA--GCGccuGAGCGg -3'
miRNA:   3'- -UUUG-GCuGGACGACGUacCGC---UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 125789 0.67 0.92695
Target:  5'- cAGCCGGCCUGCgaggcccagggguugUGCGUGGCcguaaacgucuGCGc -3'
miRNA:   3'- uUUGGCUGGACG---------------ACGUACCGcuu--------CGC- -5'
13948 5' -55.7 NC_003521.1 + 142117 0.67 0.92695
Target:  5'- cGugCGACCUGgaGCuggaGGCGGAcgacGCGg -3'
miRNA:   3'- uUugGCUGGACgaCGua--CCGCUU----CGC- -5'
13948 5' -55.7 NC_003521.1 + 133385 0.67 0.92695
Target:  5'- -uGCUGcCaCUGCUGUggcuGUGGCGAGGgCGg -3'
miRNA:   3'- uuUGGCuG-GACGACG----UACCGCUUC-GC- -5'
13948 5' -55.7 NC_003521.1 + 43108 0.67 0.921577
Target:  5'- cGAGCUGACCaagcGCUGC--GGCG-AGCGc -3'
miRNA:   3'- -UUUGGCUGGa---CGACGuaCCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 119771 0.67 0.921577
Target:  5'- --cCCGcACCUGacccgGCAUGGCGAcaacGGCu -3'
miRNA:   3'- uuuGGC-UGGACga---CGUACCGCU----UCGc -5'
13948 5' -55.7 NC_003521.1 + 212370 0.67 0.91992
Target:  5'- -cACCGcCCaagGCUGgAUGGCGAcgaagagccacagcAGCGg -3'
miRNA:   3'- uuUGGCuGGa--CGACgUACCGCU--------------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 129846 0.67 0.915972
Target:  5'- ---gCGGCCgGCgcgGCGcGGCGGAGCa -3'
miRNA:   3'- uuugGCUGGaCGa--CGUaCCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 136959 0.67 0.915972
Target:  5'- -cACgCGACCUGCUGCGcgaGGagauCGAGGCc -3'
miRNA:   3'- uuUG-GCUGGACGACGUa--CC----GCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 222626 0.67 0.915972
Target:  5'- --uUCGACCgcggGCUGCGcGGCG-AGUGu -3'
miRNA:   3'- uuuGGCUGGa---CGACGUaCCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 137252 0.67 0.915972
Target:  5'- gGGGCCGACg-GCgGCAgcgGGCaGAGCGg -3'
miRNA:   3'- -UUUGGCUGgaCGaCGUa--CCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 214635 0.67 0.910134
Target:  5'- ---gUGGCCUGCaacgGCGUGGCcugGGAGCa -3'
miRNA:   3'- uuugGCUGGACGa---CGUACCG---CUUCGc -5'
13948 5' -55.7 NC_003521.1 + 117929 0.67 0.910134
Target:  5'- --gUgGugCUGCUGCugagGUGGCGGcGGCGg -3'
miRNA:   3'- uuuGgCugGACGACG----UACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 44077 0.67 0.910134
Target:  5'- cGGCUGACCcgGCUGCu--GCGAcauGGCGg -3'
miRNA:   3'- uUUGGCUGGa-CGACGuacCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 125401 0.67 0.910134
Target:  5'- -cGCCGACCUGg-GCAaacUGGCcAAGCu -3'
miRNA:   3'- uuUGGCUGGACgaCGU---ACCGcUUCGc -5'
13948 5' -55.7 NC_003521.1 + 73770 0.67 0.910134
Target:  5'- -cGCCGACCUGCUucucgaagcaGCGgUGGaugaaGAAGUGc -3'
miRNA:   3'- uuUGGCUGGACGA----------CGU-ACCg----CUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 166205 0.68 0.904065
Target:  5'- cGACaCGGCgCUGCUGCGcgagacggUGGCGGcGGUGg -3'
miRNA:   3'- uUUG-GCUG-GACGACGU--------ACCGCU-UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.