miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 153381 0.68 0.904065
Target:  5'- aAAGCCG-CCUGCUGCcGUcgcgcgcgcccGGCGgcGUGg -3'
miRNA:   3'- -UUUGGCuGGACGACG-UA-----------CCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 166205 0.68 0.904065
Target:  5'- cGACaCGGCgCUGCUGCGcgagacggUGGCGGcGGUGg -3'
miRNA:   3'- uUUG-GCUG-GACGACGU--------ACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 129826 0.68 0.904065
Target:  5'- uGGGCCG-CCUGCUGCuggGGCccguGGCc -3'
miRNA:   3'- -UUUGGCuGGACGACGua-CCGcu--UCGc -5'
13948 5' -55.7 NC_003521.1 + 221373 0.68 0.897768
Target:  5'- -uGCUGACCUacacGCUGCugaccagcGUGGCGGugacGGCGu -3'
miRNA:   3'- uuUGGCUGGA----CGACG--------UACCGCU----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 116866 0.68 0.897768
Target:  5'- ---aCGACCUGCgcgcGCAgUGGCGcGGCu -3'
miRNA:   3'- uuugGCUGGACGa---CGU-ACCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 97044 0.68 0.897768
Target:  5'- -cGCCGcCgCUGCUGCcggcGGCGAcGGCGa -3'
miRNA:   3'- uuUGGCuG-GACGACGua--CCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 117490 0.68 0.897768
Target:  5'- cGACgGGCCUGUccgGCggGGCGuacGGCGg -3'
miRNA:   3'- uUUGgCUGGACGa--CGuaCCGCu--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 36326 0.68 0.897768
Target:  5'- -cGCCGcCCUGUUGUGUcGGCGGcgGGCu -3'
miRNA:   3'- uuUGGCuGGACGACGUA-CCGCU--UCGc -5'
13948 5' -55.7 NC_003521.1 + 42259 0.68 0.891908
Target:  5'- -cGCCGugUUGCUGCugcgaccuuaagaaGGCGcGGCGg -3'
miRNA:   3'- uuUGGCugGACGACGua------------CCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 18714 0.68 0.891245
Target:  5'- --uCCGGCUgugGCUGCcgcUGGCGGcGGCGa -3'
miRNA:   3'- uuuGGCUGGa--CGACGu--ACCGCU-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 1069 0.68 0.891245
Target:  5'- cGACCGACCaucgGCG-GGCGAGGCc -3'
miRNA:   3'- uUUGGCUGGacgaCGUaCCGCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 36834 0.68 0.891245
Target:  5'- cGGGCCGGCgCUGCugUGCcgGGUaGAGCa -3'
miRNA:   3'- -UUUGGCUG-GACG--ACGuaCCGcUUCGc -5'
13948 5' -55.7 NC_003521.1 + 227111 0.68 0.8845
Target:  5'- uGAUgGGCCUGCccgGCGcGGCGGcgGGCGa -3'
miRNA:   3'- uUUGgCUGGACGa--CGUaCCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 149018 0.68 0.883814
Target:  5'- cAGACCGACCccaGCgGCGUGGagauucuCGAGGCc -3'
miRNA:   3'- -UUUGGCUGGa--CGaCGUACC-------GCUUCGc -5'
13948 5' -55.7 NC_003521.1 + 215956 0.68 0.877537
Target:  5'- -cACCaugagGACCUGCUGCGagaGGUGGccGGCGa -3'
miRNA:   3'- uuUGG-----CUGGACGACGUa--CCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 35179 0.68 0.877537
Target:  5'- -cGCCGcuACCUGCUGCGcuucgagGGCGccuGCGu -3'
miRNA:   3'- uuUGGC--UGGACGACGUa------CCGCuu-CGC- -5'
13948 5' -55.7 NC_003521.1 + 118734 0.68 0.877537
Target:  5'- -cACCGGCacggGCUGCAgguugcUGGUGAgucGGCGg -3'
miRNA:   3'- uuUGGCUGga--CGACGU------ACCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 120948 0.68 0.87036
Target:  5'- --uCCGGCgaGggGCAgggGGCGggGCGg -3'
miRNA:   3'- uuuGGCUGgaCgaCGUa--CCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 85669 0.68 0.87036
Target:  5'- -cACCGgagGCCUGCUGCc-GGCcAAGCGc -3'
miRNA:   3'- uuUGGC---UGGACGACGuaCCGcUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 33886 0.68 0.87036
Target:  5'- ---aCGGCCUGUUGCugGGCGAcAGCa -3'
miRNA:   3'- uuugGCUGGACGACGuaCCGCU-UCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.