miRNA display CGI


Results 1 - 20 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13948 5' -55.7 NC_003521.1 + 240554 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 239792 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5'
13948 5' -55.7 NC_003521.1 + 232555 0.66 0.954312
Target:  5'- uGGCCuacuacggGGgCUGCUGUGUGGUG-AGCGg -3'
miRNA:   3'- uUUGG--------CUgGACGACGUACCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 227111 0.68 0.8845
Target:  5'- uGAUgGGCCUGCccgGCGcGGCGGcgGGCGa -3'
miRNA:   3'- uUUGgCUGGACGa--CGUaCCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 224420 0.78 0.370513
Target:  5'- -cGCCGGCCaggcGCUGCGUGGUGGgcgAGCGg -3'
miRNA:   3'- uuUGGCUGGa---CGACGUACCGCU---UCGC- -5'
13948 5' -55.7 NC_003521.1 + 222626 0.67 0.915972
Target:  5'- --uUCGACCgcggGCUGCGcGGCG-AGUGu -3'
miRNA:   3'- uuuGGCUGGa---CGACGUaCCGCuUCGC- -5'
13948 5' -55.7 NC_003521.1 + 221373 0.68 0.897768
Target:  5'- -uGCUGACCUacacGCUGCugaccagcGUGGCGGugacGGCGu -3'
miRNA:   3'- uuUGGCUGGA----CGACG--------UACCGCU----UCGC- -5'
13948 5' -55.7 NC_003521.1 + 220520 0.69 0.831459
Target:  5'- uGGCCu-CCuggUGCUGCAUGGCGccGGCGa -3'
miRNA:   3'- uUUGGcuGG---ACGACGUACCGCu-UCGC- -5'
13948 5' -55.7 NC_003521.1 + 219358 0.66 0.936994
Target:  5'- uAGGCCG-CCaGCUGCAcgccGUGAAGCGc -3'
miRNA:   3'- -UUUGGCuGGaCGACGUac--CGCUUCGC- -5'
13948 5' -55.7 NC_003521.1 + 218676 0.71 0.731755
Target:  5'- -cGCUGGCCaUGCUGCGcGGCGuGGCc -3'
miRNA:   3'- uuUGGCUGG-ACGACGUaCCGCuUCGc -5'
13948 5' -55.7 NC_003521.1 + 217245 0.66 0.950324
Target:  5'- gAGGCCGACCUGC----UGGCGcuGUGu -3'
miRNA:   3'- -UUUGGCUGGACGacguACCGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 215956 0.68 0.877537
Target:  5'- -cACCaugagGACCUGCUGCGagaGGUGGccGGCGa -3'
miRNA:   3'- uuUGG-----CUGGACGACGUa--CCGCU--UCGC- -5'
13948 5' -55.7 NC_003521.1 + 214635 0.67 0.910134
Target:  5'- ---gUGGCCUGCaacgGCGUGGCcugGGAGCa -3'
miRNA:   3'- uuugGCUGGACGa---CGUACCG---CUUCGc -5'
13948 5' -55.7 NC_003521.1 + 212370 0.67 0.91992
Target:  5'- -cACCGcCCaagGCUGgAUGGCGAcgaagagccacagcAGCGg -3'
miRNA:   3'- uuUGGCuGGa--CGACgUACCGCU--------------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 205289 0.69 0.847598
Target:  5'- aAGGCCGACUacgGCgGCGUgGGCGAgaaccuGGCGg -3'
miRNA:   3'- -UUUGGCUGGa--CGaCGUA-CCGCU------UCGC- -5'
13948 5' -55.7 NC_003521.1 + 204695 0.68 0.904065
Target:  5'- --uCCGugCUGCUgGCGgcaGcGCGggGCGu -3'
miRNA:   3'- uuuGGCugGACGA-CGUa--C-CGCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 201523 0.7 0.805942
Target:  5'- -cGCCGGCCaucugGCUGCGcGGCGugauGCGc -3'
miRNA:   3'- uuUGGCUGGa----CGACGUaCCGCuu--CGC- -5'
13948 5' -55.7 NC_003521.1 + 200761 0.66 0.958078
Target:  5'- --uCCGGCCUccGCUGCGggucccggggggUGGgGggGUGu -3'
miRNA:   3'- uuuGGCUGGA--CGACGU------------ACCgCuuCGC- -5'
13948 5' -55.7 NC_003521.1 + 197020 0.66 0.94611
Target:  5'- -cGCCGGCCgggGCaGCAgacGGUGcAGGCGc -3'
miRNA:   3'- uuUGGCUGGa--CGaCGUa--CCGC-UUCGC- -5'
13948 5' -55.7 NC_003521.1 + 192040 0.66 0.958078
Target:  5'- -cGCCGGCgUGCgcgGCAgacgcGGCGuccgcGGCGg -3'
miRNA:   3'- uuUGGCUGgACGa--CGUa----CCGCu----UCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.