miRNA display CGI


Results 41 - 60 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 37751 0.66 0.99645
Target:  5'- cGUGGCGAUGgGggUGCccuGCGGCaccacggUGGCc -3'
miRNA:   3'- cCACUGCUACgCaaGCG---CGUUG-------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 219355 0.66 0.99363
Target:  5'- uGGUGACGAUGCccgaacagGUcUCGCugcucauGCAcCUGGg -3'
miRNA:   3'- -CCACUGCUACG--------CA-AGCG-------CGUuGACCg -5'
13949 3' -52.7 NC_003521.1 + 229811 0.66 0.995928
Target:  5'- cGGcUGACGuucauUGCGgccgGUGCGACcGGCu -3'
miRNA:   3'- -CC-ACUGCu----ACGCaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 239729 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 31020 0.67 0.990632
Target:  5'- --cGGCGAggacGCGUUCGUGguGgUGGg -3'
miRNA:   3'- ccaCUGCUa---CGCAAGCGCguUgACCg -5'
13949 3' -52.7 NC_003521.1 + 36704 0.67 0.99177
Target:  5'- uGGUGAUGGUGCccUUCGUGCcGCacGCc -3'
miRNA:   3'- -CCACUGCUACGc-AAGCGCGuUGacCG- -5'
13949 3' -52.7 NC_003521.1 + 125255 0.67 0.990632
Target:  5'- cGGgGGCGAgaucaaCGUcCGCGCAGCacGGCg -3'
miRNA:   3'- -CCaCUGCUac----GCAaGCGCGUUGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 232278 0.67 0.990632
Target:  5'- cGUGACGGUGgaUGUcgUCGCGCccACgguccgGGCa -3'
miRNA:   3'- cCACUGCUAC--GCA--AGCGCGu-UGa-----CCG- -5'
13949 3' -52.7 NC_003521.1 + 150696 0.67 0.990632
Target:  5'- gGGUGcUGcUGCGccggCG-GCGACUGGCu -3'
miRNA:   3'- -CCACuGCuACGCaa--GCgCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 78652 0.67 0.990632
Target:  5'- -aUGACGAUGUcgUCGgGCuuCUcGGCg -3'
miRNA:   3'- ccACUGCUACGcaAGCgCGuuGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 110918 0.67 0.989374
Target:  5'- cGGUGcuguuccgcACGGUGcCGUUgGUGC-ACUGGg -3'
miRNA:   3'- -CCAC---------UGCUAC-GCAAgCGCGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 124273 0.67 0.989374
Target:  5'- uGGUGuC--UGCGggCGCGagagGGCUGGCu -3'
miRNA:   3'- -CCACuGcuACGCaaGCGCg---UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 79098 0.67 0.989374
Target:  5'- -cUGGCGAUGaccUCGCGCAACcgcucGGUg -3'
miRNA:   3'- ccACUGCUACgcaAGCGCGUUGa----CCG- -5'
13949 3' -52.7 NC_003521.1 + 57881 0.67 0.986465
Target:  5'- cGUGACG-UGCcuggaGCGCGAC-GGCa -3'
miRNA:   3'- cCACUGCuACGcaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 138729 0.67 0.99177
Target:  5'- aGGUGGCaGAUGUG---GCGCcGCcGGCg -3'
miRNA:   3'- -CCACUG-CUACGCaagCGCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 54158 0.67 0.989374
Target:  5'- cGGUGGCGGggGCGgcggCGaaCGCAACUcGaGCa -3'
miRNA:   3'- -CCACUGCUa-CGCaa--GC--GCGUUGA-C-CG- -5'
13949 3' -52.7 NC_003521.1 + 127759 0.67 0.989241
Target:  5'- uGGUGGCcauccUGCGacuggugaCGCGCAucucggcGCUGGCg -3'
miRNA:   3'- -CCACUGcu---ACGCaa------GCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 59651 0.67 0.988972
Target:  5'- aGGUGgucguacaagugcuGCGcgGCGUcca-GCGGCUGGCg -3'
miRNA:   3'- -CCAC--------------UGCuaCGCAagcgCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 30543 0.67 0.987987
Target:  5'- --cGACGAcGUGgagCGCGCccgccagggucAGCUGGCc -3'
miRNA:   3'- ccaCUGCUaCGCaa-GCGCG-----------UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127310 0.67 0.986465
Target:  5'- --cGACGAcgGCGacggccaGCGCGACgGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCaag----CGCGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.