miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 240267 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 115444 0.66 0.992796
Target:  5'- gGGUGACGGUG-GUU-GUGCGGacggUGGUa -3'
miRNA:   3'- -CCACUGCUACgCAAgCGCGUUg---ACCG- -5'
13949 3' -52.7 NC_003521.1 + 228726 0.66 0.995345
Target:  5'- uGGUGgGCGAgucgcuacccuccgGCcucuuucacgccgaGUUCGUGCuGCUGGCu -3'
miRNA:   3'- -CCAC-UGCUa-------------CG--------------CAAGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 36467 0.66 0.996504
Target:  5'- uGUGGCGAcaGCGUUUGaGCcGCUcGGCc -3'
miRNA:   3'- cCACUGCUa-CGCAAGCgCGuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 229811 0.66 0.995928
Target:  5'- cGGcUGACGuucauUGCGgccgGUGCGACcGGCu -3'
miRNA:   3'- -CC-ACUGCu----ACGCaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 37751 0.66 0.99645
Target:  5'- cGUGGCGAUGgGggUGCccuGCGGCaccacggUGGCc -3'
miRNA:   3'- cCACUGCUACgCaaGCG---CGUUG-------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 196938 0.66 0.995276
Target:  5'- --cGACGccGUcgUCGagcaGCAGCUGGCg -3'
miRNA:   3'- ccaCUGCuaCGcaAGCg---CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 133367 0.66 0.994541
Target:  5'- uGUGGCGAggGCGgcugUUGCuGUAACcagugUGGCg -3'
miRNA:   3'- cCACUGCUa-CGCa---AGCG-CGUUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 224487 0.66 0.994541
Target:  5'- cGGUGugGAccGCGacuaCGgGCGucaguaccGCUGGCu -3'
miRNA:   3'- -CCACugCUa-CGCaa--GCgCGU--------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 150317 0.66 0.9926
Target:  5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3'
miRNA:   3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 219355 0.66 0.99363
Target:  5'- uGGUGACGAUGCccgaacagGUcUCGCugcucauGCAcCUGGg -3'
miRNA:   3'- -CCACUGCUACG--------CA-AGCG-------CGUuGACCg -5'
13949 3' -52.7 NC_003521.1 + 127070 0.66 0.995928
Target:  5'- aGGUGcuggaGGUGCG--CGCGgAGCUGGa -3'
miRNA:   3'- -CCACug---CUACGCaaGCGCgUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 225759 0.66 0.996504
Target:  5'- gGGUGAucagcgcgcUGGUGCagcaGuCGCGACUGGUg -3'
miRNA:   3'- -CCACU---------GCUACGcaagC-GCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 123962 0.66 0.995276
Target:  5'- cGUGcgcuCGAUGa--UCGaccaGCAGCUGGCg -3'
miRNA:   3'- cCACu---GCUACgcaAGCg---CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 201049 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 171400 0.66 0.994541
Target:  5'- gGGUGACGGUG-GUccUgGUGUcGgUGGCg -3'
miRNA:   3'- -CCACUGCUACgCA--AgCGCGuUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 195370 0.66 0.995928
Target:  5'- -uUGGCGggGCGUcUGCGgGACgcgGGUc -3'
miRNA:   3'- ccACUGCuaCGCAaGCGCgUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 128149 0.66 0.995928
Target:  5'- --aGACGGUGCcgcuGUgcacgcCGCGCAucCUGGUg -3'
miRNA:   3'- ccaCUGCUACG----CAa-----GCGCGUu-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 86269 0.66 0.994541
Target:  5'- cGGUcACGAcuaccgcuucaUGCGUcaGCGCugucuGCUGGCc -3'
miRNA:   3'- -CCAcUGCU-----------ACGCAagCGCGu----UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.