miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 240267 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 239729 0.66 0.996504
Target:  5'- uGGUGgccaccagcACGAUccaGgGgUCGCGCGgcgagaGCUGGCg -3'
miRNA:   3'- -CCAC---------UGCUA---CgCaAGCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 193155 0.66 0.993717
Target:  5'- -aUGGCGGggGCGUcugcugcugcugUUGCGCAGCUGccGCc -3'
miRNA:   3'- ccACUGCUa-CGCA------------AGCGCGUUGAC--CG- -5'
13949 3' -52.7 NC_003521.1 + 218745 0.66 0.992796
Target:  5'- cGG-GACGGucccccaugcUGCGUUCGCG-GGCUcGGUc -3'
miRNA:   3'- -CCaCUGCU----------ACGCAAGCGCgUUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 201049 0.66 0.992796
Target:  5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3'
miRNA:   3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 55812 0.66 0.99645
Target:  5'- --aGAUGGUGCGcUCGaaccaguCGCAGCgcGGCa -3'
miRNA:   3'- ccaCUGCUACGCaAGC-------GCGUUGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 87570 0.66 0.995276
Target:  5'- uGGaUGACGGgcagGCGggUGCGCAcgcggACgaaGGCc -3'
miRNA:   3'- -CC-ACUGCUa---CGCaaGCGCGU-----UGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 150642 0.66 0.994541
Target:  5'- --aGGCGGggGCGU--GCGCGACgaaGGCg -3'
miRNA:   3'- ccaCUGCUa-CGCAagCGCGUUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 145162 0.66 0.992796
Target:  5'- aGUcGCGcgGCcagUCGCGCAACuccgucUGGCa -3'
miRNA:   3'- cCAcUGCuaCGca-AGCGCGUUG------ACCG- -5'
13949 3' -52.7 NC_003521.1 + 19205 0.66 0.995276
Target:  5'- --aGACGGauCGcUCGUGCGAcCUGGCu -3'
miRNA:   3'- ccaCUGCUacGCaAGCGCGUU-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 5958 0.66 0.996504
Target:  5'- cGGUGACGgcGCccGUUCccCGCGGacgGGCg -3'
miRNA:   3'- -CCACUGCuaCG--CAAGc-GCGUUga-CCG- -5'
13949 3' -52.7 NC_003521.1 + 115444 0.66 0.992796
Target:  5'- gGGUGACGGUG-GUU-GUGCGGacggUGGUa -3'
miRNA:   3'- -CCACUGCUACgCAAgCGCGUUg---ACCG- -5'
13949 3' -52.7 NC_003521.1 + 150317 0.66 0.9926
Target:  5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3'
miRNA:   3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 128592 0.66 0.995928
Target:  5'- uGGUaGGCGAUggccgucacgGCGUUCuCGgGGCUGaGCa -3'
miRNA:   3'- -CCA-CUGCUA----------CGCAAGcGCgUUGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 121109 0.66 0.994541
Target:  5'- cGGUGAaggUGggGUGUUCGCuGU-ACUGGg -3'
miRNA:   3'- -CCACU---GCuaCGCAAGCG-CGuUGACCg -5'
13949 3' -52.7 NC_003521.1 + 45713 0.66 0.995276
Target:  5'- cGGcGACGAUGaCGaggaccccCGCGacgGACUGGCc -3'
miRNA:   3'- -CCaCUGCUAC-GCaa------GCGCg--UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 224487 0.66 0.994541
Target:  5'- cGGUGugGAccGCGacuaCGgGCGucaguaccGCUGGCu -3'
miRNA:   3'- -CCACugCUa-CGCaa--GCgCGU--------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 219355 0.66 0.99363
Target:  5'- uGGUGACGAUGCccgaacagGUcUCGCugcucauGCAcCUGGg -3'
miRNA:   3'- -CCACUGCUACG--------CA-AGCG-------CGUuGACCg -5'
13949 3' -52.7 NC_003521.1 + 72478 0.66 0.993717
Target:  5'- --cGGCGAgUGCGccUCGUGCAgucACgGGCa -3'
miRNA:   3'- ccaCUGCU-ACGCa-AGCGCGU---UGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 99309 0.66 0.995276
Target:  5'- uGUGGUGGUGCGacUUCGCGCccagggauGACgGGUg -3'
miRNA:   3'- cCACUGCUACGC--AAGCGCG--------UUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.