miRNA display CGI


Results 1 - 20 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 17809 1.15 0.004724
Target:  5'- cGGUGACGAUGCGUUCGCGCAACUGGCu -3'
miRNA:   3'- -CCACUGCUACGCAAGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225798 0.83 0.374487
Target:  5'- uGGUGACGAcGCGUUcgucgaCGCGCGAC-GGCg -3'
miRNA:   3'- -CCACUGCUaCGCAA------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 123705 0.77 0.645583
Target:  5'- cGGUG-CaGGUGCGgcaCGCGCuguGCUGGCa -3'
miRNA:   3'- -CCACuG-CUACGCaa-GCGCGu--UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 80309 0.77 0.665667
Target:  5'- uGGUGACGGUG-GUgcuggagcUGCGCGACUGGa -3'
miRNA:   3'- -CCACUGCUACgCAa-------GCGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 215271 0.77 0.675673
Target:  5'- -cUGGCGGUGCGUUacgaGaCGCcGCUGGCu -3'
miRNA:   3'- ccACUGCUACGCAAg---C-GCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 29013 0.77 0.675673
Target:  5'- cGGUGGCGcgGCccgCGCGCGuCUGGUu -3'
miRNA:   3'- -CCACUGCuaCGcaaGCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 64796 0.76 0.695575
Target:  5'- --aGACGGgcgucgGCGUcgUCGCGCAACaUGGCc -3'
miRNA:   3'- ccaCUGCUa-----CGCA--AGCGCGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 60848 0.75 0.763157
Target:  5'- --gGACuucccgcagGUGUUCGCGCAGCUGGUg -3'
miRNA:   3'- ccaCUGcua------CGCAAGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 31412 0.75 0.781586
Target:  5'- cGUGACGuAUGCuggCGUGCAGCaGGCg -3'
miRNA:   3'- cCACUGC-UACGcaaGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 37450 0.74 0.79061
Target:  5'- aGGUGACGcUGUGggcUCGCGC-GCgGGCc -3'
miRNA:   3'- -CCACUGCuACGCa--AGCGCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 130186 0.74 0.808236
Target:  5'- --cGGCcagGUGUUCGCGCAGCaGGCg -3'
miRNA:   3'- ccaCUGcuaCGCAAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 83689 0.74 0.825245
Target:  5'- cGUGACGuUGUGgaCGCGCgAGCgGGCg -3'
miRNA:   3'- cCACUGCuACGCaaGCGCG-UUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 164740 0.74 0.833498
Target:  5'- cGGUGACGGcUGCGgcggCG-GCAGC-GGCg -3'
miRNA:   3'- -CCACUGCU-ACGCaa--GCgCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 204720 0.73 0.839171
Target:  5'- cGUGGCGcgGC-UUCGCGUGcugcuuuccgugcuGCUGGCg -3'
miRNA:   3'- cCACUGCuaCGcAAGCGCGU--------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 225872 0.73 0.841575
Target:  5'- aGGUGcCGGUGCuccaUGCGCGuCUGGCg -3'
miRNA:   3'- -CCACuGCUACGcaa-GCGCGUuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 204326 0.73 0.849467
Target:  5'- cGUGugG-UGCGacUGCgGCGACUGGCa -3'
miRNA:   3'- cCACugCuACGCaaGCG-CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 163896 0.73 0.849467
Target:  5'- aGGUgccGACGGUGCGUUacucggGUGCGGC-GGCa -3'
miRNA:   3'- -CCA---CUGCUACGCAAg-----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 54452 0.73 0.857169
Target:  5'- uGGUGGCGGcaaGuCGacgUCGCGCGGCggUGGCg -3'
miRNA:   3'- -CCACUGCUa--C-GCa--AGCGCGUUG--ACCG- -5'
13949 3' -52.7 NC_003521.1 + 212773 0.73 0.867619
Target:  5'- aGGUGACGAUGcCGUagagGCGCAcgauccagagaaaauGCUGGa -3'
miRNA:   3'- -CCACUGCUAC-GCAag--CGCGU---------------UGACCg -5'
13949 3' -52.7 NC_003521.1 + 67038 0.72 0.883911
Target:  5'- aGUGACGGUGUccGUggccaUCGCGCAGacccucaaggcuuuCUGGCc -3'
miRNA:   3'- cCACUGCUACG--CA-----AGCGCGUU--------------GACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.