miRNA display CGI


Results 21 - 40 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 49881 0.72 0.885953
Target:  5'- -aUGGCGGU-CGUggCGUGCGugUGGCg -3'
miRNA:   3'- ccACUGCUAcGCAa-GCGCGUugACCG- -5'
13949 3' -52.7 NC_003521.1 + 154490 0.72 0.892617
Target:  5'- cGGcGGCGAaGCGcUCGCGCGAgaGGg -3'
miRNA:   3'- -CCaCUGCUaCGCaAGCGCGUUgaCCg -5'
13949 3' -52.7 NC_003521.1 + 58030 0.72 0.892618
Target:  5'- --cGACGAggGCGcgCGCGUGuugcuGCUGGCg -3'
miRNA:   3'- ccaCUGCUa-CGCaaGCGCGU-----UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 166842 0.72 0.892618
Target:  5'- cGGUGAgGAUacgcagGCGgUgGCGCGGCgGGCg -3'
miRNA:   3'- -CCACUgCUA------CGCaAgCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 123638 0.72 0.899062
Target:  5'- cGUGAUGAUGCGcagCGCaaacagguucaGCGACaGGCg -3'
miRNA:   3'- cCACUGCUACGCaa-GCG-----------CGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 153055 0.72 0.899062
Target:  5'- cGGUGaccgagGCGGUGCGcaagGCGCAGgaGGCg -3'
miRNA:   3'- -CCAC------UGCUACGCaag-CGCGUUgaCCG- -5'
13949 3' -52.7 NC_003521.1 + 90333 0.72 0.905282
Target:  5'- cGUGcGCGcccgcccgcguGUGCGcUCGCGCGACgacgGGCg -3'
miRNA:   3'- cCAC-UGC-----------UACGCaAGCGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 60283 0.72 0.905282
Target:  5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3'
miRNA:   3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5'
13949 3' -52.7 NC_003521.1 + 74286 0.72 0.905282
Target:  5'- aGGUGACGcgGCGguagagcUCGCGCAguACcaGGUu -3'
miRNA:   3'- -CCACUGCuaCGCa------AGCGCGU--UGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 102090 0.71 0.915335
Target:  5'- cGUGAUGAUGCGcaggcccagcuucucCGUGCAGC-GGCa -3'
miRNA:   3'- cCACUGCUACGCaa-------------GCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 38451 0.71 0.91704
Target:  5'- gGGUGACGAUGaaacCGUcUGgGCu-CUGGCg -3'
miRNA:   3'- -CCACUGCUAC----GCAaGCgCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 132683 0.71 0.91704
Target:  5'- --aGACGAU-CGgcUCGCGCccGGCUGGCg -3'
miRNA:   3'- ccaCUGCUAcGCa-AGCGCG--UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 224813 0.71 0.922575
Target:  5'- cGUGGCGuaggGCG-UC-UGCGGCUGGCg -3'
miRNA:   3'- cCACUGCua--CGCaAGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 129905 0.71 0.922575
Target:  5'- --cGACGggGCGgcCGCGCGccuGCUGcGCg -3'
miRNA:   3'- ccaCUGCuaCGCaaGCGCGU---UGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 220353 0.71 0.922575
Target:  5'- -cUGGCGGugcaucagcUGCGUguaCGCGCuGCUGGUg -3'
miRNA:   3'- ccACUGCU---------ACGCAa--GCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 180361 0.71 0.932454
Target:  5'- cGUGACGGUGCugcucguGUUgGUGguACUGGg -3'
miRNA:   3'- cCACUGCUACG-------CAAgCGCguUGACCg -5'
13949 3' -52.7 NC_003521.1 + 43233 0.71 0.932951
Target:  5'- cGGUGGgCGccgGCGggUCGCGCucGCUGGg -3'
miRNA:   3'- -CCACU-GCua-CGCa-AGCGCGu-UGACCg -5'
13949 3' -52.7 NC_003521.1 + 71017 0.71 0.932951
Target:  5'- uGGUGAuCGGccGCGgcgCGCuGCAGCUGGa -3'
miRNA:   3'- -CCACU-GCUa-CGCaa-GCG-CGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 141177 0.7 0.937792
Target:  5'- aGGUGACGcgaucgGCGUU-GCGCAg--GGCg -3'
miRNA:   3'- -CCACUGCua----CGCAAgCGCGUugaCCG- -5'
13949 3' -52.7 NC_003521.1 + 71785 0.7 0.942404
Target:  5'- cGGUGACGucggccgGCGUcggUCGCagcgucGCGGCcGGCg -3'
miRNA:   3'- -CCACUGCua-----CGCA---AGCG------CGUUGaCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.