Results 21 - 40 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 41584 | 0.68 | 0.98298 |
Target: 5'- cGGcGGCGAUGa----GCGCGACUguGGCg -3' miRNA: 3'- -CCaCUGCUACgcaagCGCGUUGA--CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 42482 | 0.68 | 0.98298 |
Target: 5'- aGGUugUGGUGCGaUUGCGaCAgccGCUGGCc -3' miRNA: 3'- -CCAcuGCUACGCaAGCGC-GU---UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 43233 | 0.71 | 0.932951 |
Target: 5'- cGGUGGgCGccgGCGggUCGCGCucGCUGGg -3' miRNA: 3'- -CCACU-GCua-CGCa-AGCGCGu-UGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 45713 | 0.66 | 0.995276 |
Target: 5'- cGGcGACGAUGaCGaggaccccCGCGacgGACUGGCc -3' miRNA: 3'- -CCaCUGCUAC-GCaa------GCGCg--UUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 46339 | 0.69 | 0.974039 |
Target: 5'- gGGUGGCGAUGUGcgagUCGCuGagGACcaucuUGGCg -3' miRNA: 3'- -CCACUGCUACGCa---AGCG-Cg-UUG-----ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 49881 | 0.72 | 0.885953 |
Target: 5'- -aUGGCGGU-CGUggCGUGCGugUGGCg -3' miRNA: 3'- ccACUGCUAcGCAa-GCGCGUugACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 53463 | 0.68 | 0.984798 |
Target: 5'- --gGGCGAgccggGCcg-CGCGCcGCUGGCc -3' miRNA: 3'- ccaCUGCUa----CGcaaGCGCGuUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 54158 | 0.67 | 0.989374 |
Target: 5'- cGGUGGCGGggGCGgcggCGaaCGCAACUcGaGCa -3' miRNA: 3'- -CCACUGCUa-CGCaa--GC--GCGUUGA-C-CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 54452 | 0.73 | 0.857169 |
Target: 5'- uGGUGGCGGcaaGuCGacgUCGCGCGGCggUGGCg -3' miRNA: 3'- -CCACUGCUa--C-GCa--AGCGCGUUG--ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 55812 | 0.66 | 0.99645 |
Target: 5'- --aGAUGGUGCGcUCGaaccaguCGCAGCgcGGCa -3' miRNA: 3'- ccaCUGCUACGCaAGC-------GCGUUGa-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 57236 | 0.7 | 0.958596 |
Target: 5'- --aGGCGA-GCGgcucUCGCGCGGCcaguUGGCc -3' miRNA: 3'- ccaCUGCUaCGCa---AGCGCGUUG----ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 57881 | 0.67 | 0.986465 |
Target: 5'- cGUGACG-UGCcuggaGCGCGAC-GGCa -3' miRNA: 3'- cCACUGCuACGcaag-CGCGUUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 58030 | 0.72 | 0.892618 |
Target: 5'- --cGACGAggGCGcgCGCGUGuugcuGCUGGCg -3' miRNA: 3'- ccaCUGCUa-CGCaaGCGCGU-----UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 59625 | 0.67 | 0.985816 |
Target: 5'- cGGcGGCGAccgcggcucgcagGCGUUgGUGCGgcagacGCUGGCg -3' miRNA: 3'- -CCaCUGCUa------------CGCAAgCGCGU------UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 59651 | 0.67 | 0.988972 |
Target: 5'- aGGUGgucguacaagugcuGCGcgGCGUcca-GCGGCUGGCg -3' miRNA: 3'- -CCAC--------------UGCuaCGCAagcgCGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 60283 | 0.72 | 0.905282 |
Target: 5'- aGGUGAggcCGGUGCugUCGCGCuGCUgcaGGCu -3' miRNA: 3'- -CCACU---GCUACGcaAGCGCGuUGA---CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 60848 | 0.75 | 0.763157 |
Target: 5'- --gGACuucccgcagGUGUUCGCGCAGCUGGUg -3' miRNA: 3'- ccaCUGcua------CGCAAGCGCGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 63815 | 0.69 | 0.974039 |
Target: 5'- aGGUGACGAggGCGgcUC-CGUGACgcugGGCc -3' miRNA: 3'- -CCACUGCUa-CGCa-AGcGCGUUGa---CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 64287 | 0.66 | 0.996504 |
Target: 5'- uGGUcGAUGGUGCGcuccagCGCcuGCAGCUccucuaggGGCa -3' miRNA: 3'- -CCA-CUGCUACGCaa----GCG--CGUUGA--------CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 64796 | 0.76 | 0.695575 |
Target: 5'- --aGACGGgcgucgGCGUcgUCGCGCAACaUGGCc -3' miRNA: 3'- ccaCUGCUa-----CGCA--AGCGCGUUG-ACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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