miRNA display CGI


Results 61 - 80 of 160 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 150266 0.69 0.971351
Target:  5'- aGGUGGCGu--CG-UCGUGCGGCgGGUg -3'
miRNA:   3'- -CCACUGCuacGCaAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 118475 0.69 0.971351
Target:  5'- cGGcGACGGcgGCGgcCGCGC-GCUcGGCg -3'
miRNA:   3'- -CCaCUGCUa-CGCaaGCGCGuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 71575 0.69 0.971351
Target:  5'- -uUGGCGuacaGUUCGCGCAGCaGGUu -3'
miRNA:   3'- ccACUGCuacgCAAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 124020 0.69 0.971351
Target:  5'- aGGUGccGCGGUGCGUcaGCGgCuGCUuGGCg -3'
miRNA:   3'- -CCAC--UGCUACGCAagCGC-GuUGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 145438 0.69 0.971351
Target:  5'- aGGUGccaGA--CGgagUUGCGCGACUGGCc -3'
miRNA:   3'- -CCACug-CUacGCa--AGCGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 164692 0.69 0.973253
Target:  5'- cGGUGGCGcugcuagcaccagcgGCGgugUgGUGguGCUGGCg -3'
miRNA:   3'- -CCACUGCua-------------CGCa--AgCGCguUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 63815 0.69 0.974039
Target:  5'- aGGUGACGAggGCGgcUC-CGUGACgcugGGCc -3'
miRNA:   3'- -CCACUGCUa-CGCa-AGcGCGUUGa---CCG- -5'
13949 3' -52.7 NC_003521.1 + 46339 0.69 0.974039
Target:  5'- gGGUGGCGAUGUGcgagUCGCuGagGACcaucuUGGCg -3'
miRNA:   3'- -CCACUGCUACGCa---AGCG-Cg-UUG-----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 77857 0.69 0.974039
Target:  5'- cGGUGACG-UGgGUUCG-GCcAC-GGCg -3'
miRNA:   3'- -CCACUGCuACgCAAGCgCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 115628 0.68 0.976539
Target:  5'- --aGAUGAUGCGgaucaggggcUCGUGCGugUcGGCg -3'
miRNA:   3'- ccaCUGCUACGCa---------AGCGCGUugA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 111950 0.68 0.977488
Target:  5'- -cUGGCGcgGCGgcaggaugagucugUUGCGCAcauuCUGGCa -3'
miRNA:   3'- ccACUGCuaCGCa-------------AGCGCGUu---GACCG- -5'
13949 3' -52.7 NC_003521.1 + 74587 0.68 0.978858
Target:  5'- cGGcGGCGcgGCGUcC-CGCGGCcGGCg -3'
miRNA:   3'- -CCaCUGCuaCGCAaGcGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 103477 0.68 0.978858
Target:  5'- aGGcGACGAacUGCGgcaCGCGCuGGCgaaagGGCg -3'
miRNA:   3'- -CCaCUGCU--ACGCaa-GCGCG-UUGa----CCG- -5'
13949 3' -52.7 NC_003521.1 + 131073 0.68 0.978858
Target:  5'- cGGUGGCGGcgaccGCGgcUCGCGCGggcuccggacgGCggGGCg -3'
miRNA:   3'- -CCACUGCUa----CGCa-AGCGCGU-----------UGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 234564 0.68 0.978858
Target:  5'- cGGUGACGAgggcggucUGCGUccCGCcccagggcaggGCGACgaggUGGCg -3'
miRNA:   3'- -CCACUGCU--------ACGCAa-GCG-----------CGUUG----ACCG- -5'
13949 3' -52.7 NC_003521.1 + 162913 0.68 0.979736
Target:  5'- gGGUGACGggGaccucaaggagaaccUGUUCGUGC-GCgggGGCa -3'
miRNA:   3'- -CCACUGCuaC---------------GCAAGCGCGuUGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 202085 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 116864 0.68 0.981003
Target:  5'- --cGACGAccUGCG--CGCGCAG-UGGCg -3'
miRNA:   3'- ccaCUGCU--ACGCaaGCGCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 225138 0.68 0.981003
Target:  5'- uGGUcGACGugguUGCGgacccagUCGCGCAccaccucggcGCUGuGCu -3'
miRNA:   3'- -CCA-CUGCu---ACGCa------AGCGCGU----------UGAC-CG- -5'
13949 3' -52.7 NC_003521.1 + 239230 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.