miRNA display CGI


Results 61 - 80 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 59651 0.67 0.988972
Target:  5'- aGGUGgucguacaagugcuGCGcgGCGUcca-GCGGCUGGCg -3'
miRNA:   3'- -CCAC--------------UGCuaCGCAagcgCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 26774 0.67 0.987987
Target:  5'- -aUGACGAUGgGgaCGCGCucggggGGCc -3'
miRNA:   3'- ccACUGCUACgCaaGCGCGuuga--CCG- -5'
13949 3' -52.7 NC_003521.1 + 30543 0.67 0.987987
Target:  5'- --cGACGAcGUGgagCGCGCccgccagggucAGCUGGCc -3'
miRNA:   3'- ccaCUGCUaCGCaa-GCGCG-----------UUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 154683 0.67 0.987841
Target:  5'- cGGUcGACGcgGgGgaCGCGCGugcccgccuccugAUUGGCg -3'
miRNA:   3'- -CCA-CUGCuaCgCaaGCGCGU-------------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 57881 0.67 0.986465
Target:  5'- cGUGACG-UGCcuggaGCGCGAC-GGCa -3'
miRNA:   3'- cCACUGCuACGcaag-CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 89942 0.67 0.986465
Target:  5'- uGGUGGCgGAUGaaaaagcCGCGUcuCUGGCg -3'
miRNA:   3'- -CCACUG-CUACgcaa---GCGCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 100110 0.67 0.986465
Target:  5'- --cGACagcagGAUGCGacCcCGCGGCUGGCg -3'
miRNA:   3'- ccaCUG-----CUACGCaaGcGCGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 127310 0.67 0.986465
Target:  5'- --cGACGAcgGCGacggccaGCGCGACgGGCa -3'
miRNA:   3'- ccaCUGCUa-CGCaag----CGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 59625 0.67 0.985816
Target:  5'- cGGcGGCGAccgcggcucgcagGCGUUgGUGCGgcagacGCUGGCg -3'
miRNA:   3'- -CCaCUGCUa------------CGCAAgCGCGU------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 223413 0.68 0.984798
Target:  5'- cGGUGGCccUGCGUaacccgGC-CAACUGGCu -3'
miRNA:   3'- -CCACUGcuACGCAag----CGcGUUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 53463 0.68 0.984798
Target:  5'- --gGGCGAgccggGCcg-CGCGCcGCUGGCc -3'
miRNA:   3'- ccaCUGCUa----CGcaaGCGCGuUGACCG- -5'
13949 3' -52.7 NC_003521.1 + 142595 0.68 0.983726
Target:  5'- uGGcGGCGGccucgcgcacccaguUGCGacgacgCGCGCGGCUGGg -3'
miRNA:   3'- -CCaCUGCU---------------ACGCaa----GCGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 124811 0.68 0.98298
Target:  5'- cGUGACGua-CGU--GCGCAaGCUGGCg -3'
miRNA:   3'- cCACUGCuacGCAagCGCGU-UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 42482 0.68 0.98298
Target:  5'- aGGUugUGGUGCGaUUGCGaCAgccGCUGGCc -3'
miRNA:   3'- -CCAcuGCUACGCaAGCGC-GU---UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 41584 0.68 0.98298
Target:  5'- cGGcGGCGAUGa----GCGCGACUguGGCg -3'
miRNA:   3'- -CCaCUGCUACgcaagCGCGUUGA--CCG- -5'
13949 3' -52.7 NC_003521.1 + 102771 0.68 0.98298
Target:  5'- cGUGGcCGAcauggaccUGCGgcUGCGCGAC-GGCg -3'
miRNA:   3'- cCACU-GCU--------ACGCaaGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 121770 0.68 0.98298
Target:  5'- uGGaUGAUGGUGuCGgccaCGgGCAGgUGGCg -3'
miRNA:   3'- -CC-ACUGCUAC-GCaa--GCgCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 144919 0.68 0.98279
Target:  5'- cGGUGGcCGAggaGUucaugUCGCGCGucgccgcGCUGGCu -3'
miRNA:   3'- -CCACU-GCUacgCA-----AGCGCGU-------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 116864 0.68 0.981003
Target:  5'- --cGACGAccUGCG--CGCGCAG-UGGCg -3'
miRNA:   3'- ccaCUGCU--ACGCaaGCGCGUUgACCG- -5'
13949 3' -52.7 NC_003521.1 + 202085 0.68 0.981003
Target:  5'- cGG-GACGggGCccggCGCcucuaauaccGCAGCUGGCg -3'
miRNA:   3'- -CCaCUGCuaCGcaa-GCG----------CGUUGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.