Results 41 - 60 of 160 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 3' | -52.7 | NC_003521.1 | + | 218745 | 0.66 | 0.992796 |
Target: 5'- cGG-GACGGucccccaugcUGCGUUCGCG-GGCUcGGUc -3' miRNA: 3'- -CCaCUGCU----------ACGCAAGCGCgUUGA-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 240267 | 0.66 | 0.992796 |
Target: 5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3' miRNA: 3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 201049 | 0.66 | 0.992796 |
Target: 5'- cGGUGugGAUcGCGgaCG-GCGAUuaUGGUu -3' miRNA: 3'- -CCACugCUA-CGCaaGCgCGUUG--ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150317 | 0.66 | 0.9926 |
Target: 5'- aGGUcGACGAUGaccacccgGUGCAGCgUGGCg -3' miRNA: 3'- -CCA-CUGCUACgcaag---CGCGUUG-ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 36704 | 0.67 | 0.99177 |
Target: 5'- uGGUGAUGGUGCccUUCGUGCcGCacGCc -3' miRNA: 3'- -CCACUGCUACGc-AAGCGCGuUGacCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 4950 | 0.67 | 0.99177 |
Target: 5'- cGG-GACGggGgGgacCGCGCGACgucgccGGCg -3' miRNA: 3'- -CCaCUGCuaCgCaa-GCGCGUUGa-----CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 138729 | 0.67 | 0.99177 |
Target: 5'- aGGUGGCaGAUGUG---GCGCcGCcGGCg -3' miRNA: 3'- -CCACUG-CUACGCaagCGCGuUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 156028 | 0.67 | 0.99177 |
Target: 5'- aGGUGAUGcgcaGCGUgagcagcgucUCGCGguAC-GGCg -3' miRNA: 3'- -CCACUGCua--CGCA----------AGCGCguUGaCCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 187993 | 0.67 | 0.99177 |
Target: 5'- cGUGGCGAUGagacaagUCaCGUAccGCUGGCg -3' miRNA: 3'- cCACUGCUACgca----AGcGCGU--UGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 125255 | 0.67 | 0.990632 |
Target: 5'- cGGgGGCGAgaucaaCGUcCGCGCAGCacGGCg -3' miRNA: 3'- -CCaCUGCUac----GCAaGCGCGUUGa-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 232278 | 0.67 | 0.990632 |
Target: 5'- cGUGACGGUGgaUGUcgUCGCGCccACgguccgGGCa -3' miRNA: 3'- cCACUGCUAC--GCA--AGCGCGu-UGa-----CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 150696 | 0.67 | 0.990632 |
Target: 5'- gGGUGcUGcUGCGccggCG-GCGACUGGCu -3' miRNA: 3'- -CCACuGCuACGCaa--GCgCGUUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 78652 | 0.67 | 0.990632 |
Target: 5'- -aUGACGAUGUcgUCGgGCuuCUcGGCg -3' miRNA: 3'- ccACUGCUACGcaAGCgCGuuGA-CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 31020 | 0.67 | 0.990632 |
Target: 5'- --cGGCGAggacGCGUUCGUGguGgUGGg -3' miRNA: 3'- ccaCUGCUa---CGCAAGCGCguUgACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 17207 | 0.67 | 0.990632 |
Target: 5'- -aUGGCGAgagaagaGCGUcgccgUCGCGCGguaUGGCa -3' miRNA: 3'- ccACUGCUa------CGCA-----AGCGCGUug-ACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 110918 | 0.67 | 0.989374 |
Target: 5'- cGGUGcuguuccgcACGGUGcCGUUgGUGC-ACUGGg -3' miRNA: 3'- -CCAC---------UGCUAC-GCAAgCGCGuUGACCg -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 124273 | 0.67 | 0.989374 |
Target: 5'- uGGUGuC--UGCGggCGCGagagGGCUGGCu -3' miRNA: 3'- -CCACuGcuACGCaaGCGCg---UUGACCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 79098 | 0.67 | 0.989374 |
Target: 5'- -cUGGCGAUGaccUCGCGCAACcgcucGGUg -3' miRNA: 3'- ccACUGCUACgcaAGCGCGUUGa----CCG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 54158 | 0.67 | 0.989374 |
Target: 5'- cGGUGGCGGggGCGgcggCGaaCGCAACUcGaGCa -3' miRNA: 3'- -CCACUGCUa-CGCaa--GC--GCGUUGA-C-CG- -5' |
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13949 | 3' | -52.7 | NC_003521.1 | + | 127759 | 0.67 | 0.989241 |
Target: 5'- uGGUGGCcauccUGCGacuggugaCGCGCAucucggcGCUGGCg -3' miRNA: 3'- -CCACUGcu---ACGCaa------GCGCGU-------UGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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