miRNA display CGI


Results 41 - 60 of 160 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 3' -52.7 NC_003521.1 + 66958 0.69 0.962096
Target:  5'- -cUGGCGcUGCGgcaggacgaGCGCAGcCUGGCa -3'
miRNA:   3'- ccACUGCuACGCaag------CGCGUU-GACCG- -5'
13949 3' -52.7 NC_003521.1 + 67038 0.72 0.883911
Target:  5'- aGUGACGGUGUccGUggccaUCGCGCAGacccucaaggcuuuCUGGCc -3'
miRNA:   3'- cCACUGCUACG--CA-----AGCGCGUU--------------GACCG- -5'
13949 3' -52.7 NC_003521.1 + 69251 0.66 0.994541
Target:  5'- uGGUGAUGAUG-GUg-GC-CGACgUGGCa -3'
miRNA:   3'- -CCACUGCUACgCAagCGcGUUG-ACCG- -5'
13949 3' -52.7 NC_003521.1 + 71017 0.71 0.932951
Target:  5'- uGGUGAuCGGccGCGgcgCGCuGCAGCUGGa -3'
miRNA:   3'- -CCACU-GCUa-CGCaa-GCG-CGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 71575 0.69 0.971351
Target:  5'- -uUGGCGuacaGUUCGCGCAGCaGGUu -3'
miRNA:   3'- ccACUGCuacgCAAGCGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 71785 0.7 0.942404
Target:  5'- cGGUGACGucggccgGCGUcggUCGCagcgucGCGGCcGGCg -3'
miRNA:   3'- -CCACUGCua-----CGCA---AGCG------CGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 72478 0.66 0.993717
Target:  5'- --cGGCGAgUGCGccUCGUGCAgucACgGGCa -3'
miRNA:   3'- ccaCUGCU-ACGCa-AGCGCGU---UGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 74286 0.72 0.905282
Target:  5'- aGGUGACGcgGCGguagagcUCGCGCAguACcaGGUu -3'
miRNA:   3'- -CCACUGCuaCGCa------AGCGCGU--UGa-CCG- -5'
13949 3' -52.7 NC_003521.1 + 74587 0.68 0.978858
Target:  5'- cGGcGGCGcgGCGUcC-CGCGGCcGGCg -3'
miRNA:   3'- -CCaCUGCuaCGCAaGcGCGUUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 77857 0.69 0.974039
Target:  5'- cGGUGACG-UGgGUUCG-GCcAC-GGCg -3'
miRNA:   3'- -CCACUGCuACgCAAGCgCGuUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 78652 0.67 0.990632
Target:  5'- -aUGACGAUGUcgUCGgGCuuCUcGGCg -3'
miRNA:   3'- ccACUGCUACGcaAGCgCGuuGA-CCG- -5'
13949 3' -52.7 NC_003521.1 + 79098 0.67 0.989374
Target:  5'- -cUGGCGAUGaccUCGCGCAACcgcucGGUg -3'
miRNA:   3'- ccACUGCUACgcaAGCGCGUUGa----CCG- -5'
13949 3' -52.7 NC_003521.1 + 80309 0.77 0.665667
Target:  5'- uGGUGACGGUG-GUgcuggagcUGCGCGACUGGa -3'
miRNA:   3'- -CCACUGCUACgCAa-------GCGCGUUGACCg -5'
13949 3' -52.7 NC_003521.1 + 83689 0.74 0.825245
Target:  5'- cGUGACGuUGUGgaCGCGCgAGCgGGCg -3'
miRNA:   3'- cCACUGCuACGCaaGCGCG-UUGaCCG- -5'
13949 3' -52.7 NC_003521.1 + 86269 0.66 0.994541
Target:  5'- cGGUcACGAcuaccgcuucaUGCGUcaGCGCugucuGCUGGCc -3'
miRNA:   3'- -CCAcUGCU-----------ACGCAagCGCGu----UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 86665 0.69 0.968468
Target:  5'- -uUGACGAcGUGaUCGCGCcgaaagaagacGCUGGCg -3'
miRNA:   3'- ccACUGCUaCGCaAGCGCGu----------UGACCG- -5'
13949 3' -52.7 NC_003521.1 + 87570 0.66 0.995276
Target:  5'- uGGaUGACGGgcagGCGggUGCGCAcgcggACgaaGGCc -3'
miRNA:   3'- -CC-ACUGCUa---CGCaaGCGCGU-----UGa--CCG- -5'
13949 3' -52.7 NC_003521.1 + 89284 0.69 0.965065
Target:  5'- cGUGAUGGUacaacccGCGUcCGCGCcgccuCUGGCc -3'
miRNA:   3'- cCACUGCUA-------CGCAaGCGCGuu---GACCG- -5'
13949 3' -52.7 NC_003521.1 + 89942 0.67 0.986465
Target:  5'- uGGUGGCgGAUGaaaaagcCGCGUcuCUGGCg -3'
miRNA:   3'- -CCACUG-CUACgcaa---GCGCGuuGACCG- -5'
13949 3' -52.7 NC_003521.1 + 90333 0.72 0.905282
Target:  5'- cGUGcGCGcccgcccgcguGUGCGcUCGCGCGACgacgGGCg -3'
miRNA:   3'- cCAC-UGC-----------UACGCaAGCGCGUUGa---CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.