miRNA display CGI


Results 61 - 80 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 34292 0.66 0.7377
Target:  5'- uUCGCCcaGGGCCGugaGGGGCuCGCgCGUGuACa -3'
miRNA:   3'- -GGCGG--CCCGGC---CCUUG-GCG-GCAC-UGg -5'
13949 5' -63.3 NC_003521.1 + 86590 0.66 0.7377
Target:  5'- aCGCCGcaGCCGGGGAagaagcgcUCGUgGUGGCg -3'
miRNA:   3'- gGCGGCc-CGGCCCUU--------GGCGgCACUGg -5'
13949 5' -63.3 NC_003521.1 + 105183 0.66 0.736815
Target:  5'- aCGCUGGGCCccccgccgaucguGGGAuCCGcCCGcGAgCu -3'
miRNA:   3'- gGCGGCCCGG-------------CCCUuGGC-GGCaCUgG- -5'
13949 5' -63.3 NC_003521.1 + 50399 0.66 0.734158
Target:  5'- aCGCCGGGgagaggagaCGGGAGgaagaaaucgagaCGCCG-GACCc -3'
miRNA:   3'- gGCGGCCCg--------GCCCUUg------------GCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 507 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 241056 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 200260 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 150060 0.66 0.728822
Target:  5'- aCgGCC-GGCCGuucgcGGAA-CGCCGUGGCg -3'
miRNA:   3'- -GgCGGcCCGGC-----CCUUgGCGGCACUGg -5'
13949 5' -63.3 NC_003521.1 + 68623 0.66 0.728822
Target:  5'- -gGCaGGGCCGGcagcGGugCGCCGUcGGCg -3'
miRNA:   3'- ggCGgCCCGGCC----CUugGCGGCA-CUGg -5'
13949 5' -63.3 NC_003521.1 + 117053 0.66 0.728822
Target:  5'- uUCGCCcgaggcGGCCGcGGAGCCGgCGgucacGCCg -3'
miRNA:   3'- -GGCGGc-----CCGGC-CCUUGGCgGCac---UGG- -5'
13949 5' -63.3 NC_003521.1 + 3657 0.66 0.728822
Target:  5'- gCCGCCGucugccucggcGGCCGGGAcccUCGUCGgaugcUGACg -3'
miRNA:   3'- -GGCGGC-----------CCGGCCCUu--GGCGGC-----ACUGg -5'
13949 5' -63.3 NC_003521.1 + 162363 0.66 0.728822
Target:  5'- gCGCCGGGCCGcGuucCCaGCCGc-GCCg -3'
miRNA:   3'- gGCGGCCCGGCcCuu-GG-CGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 89999 0.66 0.728822
Target:  5'- aCCGCCgaccccucGGGUCGGG--CCGCUGgggGAUg -3'
miRNA:   3'- -GGCGG--------CCCGGCCCuuGGCGGCa--CUGg -5'
13949 5' -63.3 NC_003521.1 + 153884 0.66 0.728822
Target:  5'- cCCGCUGGcGCa-GGAGCUGCUGagcGCCa -3'
miRNA:   3'- -GGCGGCC-CGgcCCUUGGCGGCac-UGG- -5'
13949 5' -63.3 NC_003521.1 + 146003 0.66 0.728822
Target:  5'- gCGCagGGGCuCGGGcgccuugagcGGCCGCgcgcgcuugagCGUGGCCu -3'
miRNA:   3'- gGCGg-CCCG-GCCC----------UUGGCG-----------GCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 68548 0.66 0.728822
Target:  5'- aCCGUCaGGCgGGGGAUC-UCGUG-CCg -3'
miRNA:   3'- -GGCGGcCCGgCCCUUGGcGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 119901 0.66 0.727931
Target:  5'- cCCGCgggUGGGCCuGGAACagguggaUGCCGcUGACg -3'
miRNA:   3'- -GGCG---GCCCGGcCCUUG-------GCGGC-ACUGg -5'
13949 5' -63.3 NC_003521.1 + 33642 0.66 0.727931
Target:  5'- gCCGUggagGGGCggccagcagagCGGGAuccagcgACCgGCCGUGGCCc -3'
miRNA:   3'- -GGCGg---CCCG-----------GCCCU-------UGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 187872 0.66 0.727931
Target:  5'- cUCGCCGGGgaguCCGcGGGcgaagcgACCGCCGgcgaaGCCc -3'
miRNA:   3'- -GGCGGCCC----GGC-CCU-------UGGCGGCac---UGG- -5'
13949 5' -63.3 NC_003521.1 + 139220 0.66 0.727931
Target:  5'- aCUGCgucaUGGGUCcgcagGGGAuguaacagaagcaGCCGCCGUGGuCCg -3'
miRNA:   3'- -GGCG----GCCCGG-----CCCU-------------UGGCGGCACU-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.