Results 41 - 60 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 5' | -63.3 | NC_003521.1 | + | 239654 | 0.66 | 0.755222 |
Target: 5'- aCGaaCUGGGCCGcGAgcugcGCCGCCgGUGGCa -3' miRNA: 3'- gGC--GGCCCGGCcCU-----UGGCGG-CACUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 137020 | 0.66 | 0.755222 |
Target: 5'- -gGCCGaGGcCCGGGcggucaauAACCGgCGgcUGACCu -3' miRNA: 3'- ggCGGC-CC-GGCCC--------UUGGCgGC--ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 113527 | 0.66 | 0.755222 |
Target: 5'- gCGCaGcGGCUGGGAucccuCgCGCCGggacGACCa -3' miRNA: 3'- gGCGgC-CCGGCCCUu----G-GCGGCa---CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 77249 | 0.66 | 0.755222 |
Target: 5'- uCgGCgGGGUccaCGGGGuacucGCCGCCGggcACCa -3' miRNA: 3'- -GgCGgCCCG---GCCCU-----UGGCGGCac-UGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 178673 | 0.66 | 0.754354 |
Target: 5'- aCGCUGGaacaCCGGGuggucgcGGCCGCUcagguaccagGUGACCu -3' miRNA: 3'- gGCGGCCc---GGCCC-------UUGGCGG----------CACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 31891 | 0.66 | 0.751744 |
Target: 5'- aCCGCCaGGCCGcggcacaGGAACUGCgGcaggcagcgcgcgaUGACUc -3' miRNA: 3'- -GGCGGcCCGGC-------CCUUGGCGgC--------------ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 192483 | 0.66 | 0.746502 |
Target: 5'- gCGCCGGGUCGcaagaaacaGGGuCCGCCGacgaaACCc -3' miRNA: 3'- gGCGGCCCGGC---------CCUuGGCGGCac---UGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 97874 | 0.66 | 0.746502 |
Target: 5'- -gGCCaGGCC-GGAGCCgucGCCGUGuCUu -3' miRNA: 3'- ggCGGcCCGGcCCUUGG---CGGCACuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 110931 | 0.66 | 0.746502 |
Target: 5'- aCCGaCGcGCUGGccGACCggGCCGUGACCg -3' miRNA: 3'- -GGCgGCcCGGCCc-UUGG--CGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 100584 | 0.66 | 0.746502 |
Target: 5'- aCCGCCguagGGGCCGGuGGACgaggcggcgaagCGUCucuUGGCCg -3' miRNA: 3'- -GGCGG----CCCGGCC-CUUG------------GCGGc--ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 88066 | 0.66 | 0.746502 |
Target: 5'- gUCGCgGuGGUCGGcGGCgC-CCGUGACCa -3' miRNA: 3'- -GGCGgC-CCGGCCcUUG-GcGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 219458 | 0.66 | 0.746502 |
Target: 5'- aCCGCCaucauGGGCCuGGGGcucaGCCGCCa----- -3' miRNA: 3'- -GGCGG-----CCCGG-CCCU----UGGCGGcacugg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 55365 | 0.66 | 0.746502 |
Target: 5'- cUCGCCGGGUgCGGaGGugAUCGCCGagcggGugCg -3' miRNA: 3'- -GGCGGCCCG-GCC-CU--UGGCGGCa----CugG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 42289 | 0.66 | 0.746502 |
Target: 5'- gCUGCgUGGuGCCGGcGGcgucugucguGCCGCCGUGuuGCUg -3' miRNA: 3'- -GGCG-GCC-CGGCC-CU----------UGGCGGCAC--UGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 24401 | 0.66 | 0.746502 |
Target: 5'- gCGCCGGGcCCGcGGAGCauagaaaGCCa-GACg -3' miRNA: 3'- gGCGGCCC-GGC-CCUUGg------CGGcaCUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 39014 | 0.66 | 0.746502 |
Target: 5'- -gGCCGGaG-CGGGcGCCGCCGaagGAUUg -3' miRNA: 3'- ggCGGCC-CgGCCCuUGGCGGCa--CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 60692 | 0.66 | 0.746502 |
Target: 5'- gCCGCgCGGGggacCCGGGGGCgGCgCGggucGcACCa -3' miRNA: 3'- -GGCG-GCCC----GGCCCUUGgCG-GCa---C-UGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 186883 | 0.66 | 0.745625 |
Target: 5'- aCCGCUGcuGGCCGGuGGuccggcaguaccgACUGCCGggcGGCUg -3' miRNA: 3'- -GGCGGC--CCGGCC-CU-------------UGGCGGCa--CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 204127 | 0.66 | 0.745625 |
Target: 5'- cCUGCuCGGGCCaggcgccGGAGCCcggccucagcucgGCCGaGACCc -3' miRNA: 3'- -GGCG-GCCCGGc------CCUUGG-------------CGGCaCUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 166080 | 0.66 | 0.74299 |
Target: 5'- cCCGCaGGGCCauagcGGGAGCgGgCCGgcagguucacgcgGGCCu -3' miRNA: 3'- -GGCGgCCCGG-----CCCUUGgC-GGCa------------CUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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