miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 91933 0.66 0.772388
Target:  5'- cCCGCUGcggaaugcGCCaGGGAGCCGCgGgcacGCCg -3'
miRNA:   3'- -GGCGGCc-------CGG-CCCUUGGCGgCac--UGG- -5'
13949 5' -63.3 NC_003521.1 + 137533 0.66 0.771539
Target:  5'- gUCGCUGGGgcccccgcucugcCCGcu-GCCGCCGUcGGCCc -3'
miRNA:   3'- -GGCGGCCC-------------GGCccuUGGCGGCA-CUGG- -5'
13949 5' -63.3 NC_003521.1 + 73386 0.66 0.769838
Target:  5'- cCCGCCGugcagcaccuccguGGCCacgguGGAuugcguggcGCUGCgGUGGCCg -3'
miRNA:   3'- -GGCGGC--------------CCGGc----CCU---------UGGCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 224437 0.66 0.767279
Target:  5'- aCCGCuuuCGGGCCGagaugcucaacaccuGGGACgGCUGgGACg -3'
miRNA:   3'- -GGCG---GCCCGGC---------------CCUUGgCGGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 18695 0.66 0.763853
Target:  5'- uUCGCCauGGCCGGcgcGAuCCgGCUGUGGCUg -3'
miRNA:   3'- -GGCGGc-CCGGCC---CUuGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 76297 0.66 0.763853
Target:  5'- cCCGCU---CCGaGGAGCUGCCGUcggugggcGACCg -3'
miRNA:   3'- -GGCGGcccGGC-CCUUGGCGGCA--------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 224815 0.66 0.763853
Target:  5'- gCCGCUGGuuccuGCUGGG---CGCCGUGgguGCCu -3'
miRNA:   3'- -GGCGGCC-----CGGCCCuugGCGGCAC---UGG- -5'
13949 5' -63.3 NC_003521.1 + 142112 0.66 0.763853
Target:  5'- -aGgCGGuGCCGGGAGCCGUa--GGCg -3'
miRNA:   3'- ggCgGCC-CGGCCCUUGGCGgcaCUGg -5'
13949 5' -63.3 NC_003521.1 + 114312 0.66 0.763853
Target:  5'- aCGCCGcGGaCCuGGGcuucuGCCGCC-UGGCg -3'
miRNA:   3'- gGCGGC-CC-GG-CCCu----UGGCGGcACUGg -5'
13949 5' -63.3 NC_003521.1 + 117876 0.66 0.763853
Target:  5'- gCGCCGGGUaggaCGGGGGCgGCgGUa--- -3'
miRNA:   3'- gGCGGCCCG----GCCCUUGgCGgCAcugg -5'
13949 5' -63.3 NC_003521.1 + 88940 0.66 0.763853
Target:  5'- uCC-CCGaGCCGGG--CCGCCGgcccaccGACCu -3'
miRNA:   3'- -GGcGGCcCGGCCCuuGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 74152 0.66 0.763853
Target:  5'- gCGCCacgGGGCCcaGGuGCCGCUGgccGACUg -3'
miRNA:   3'- gGCGG---CCCGGc-CCuUGGCGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 143420 0.66 0.761274
Target:  5'- uUCGCCuGGGCCaGGGcuCCuucggcgaggucugGCCGcucGACCg -3'
miRNA:   3'- -GGCGG-CCCGG-CCCuuGG--------------CGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 77249 0.66 0.755222
Target:  5'- uCgGCgGGGUccaCGGGGuacucGCCGCCGggcACCa -3'
miRNA:   3'- -GgCGgCCCG---GCCCU-----UGGCGGCac-UGG- -5'
13949 5' -63.3 NC_003521.1 + 109810 0.66 0.755222
Target:  5'- gUGUCGGGCCaGGAuguagGCCGCCcgcGUcaGGCUg -3'
miRNA:   3'- gGCGGCCCGGcCCU-----UGGCGG---CA--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 193084 0.66 0.755222
Target:  5'- gCCGCCGGGCuucugCGGcuGCUGCCaGcGAUCc -3'
miRNA:   3'- -GGCGGCCCG-----GCCcuUGGCGG-CaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 113527 0.66 0.755222
Target:  5'- gCGCaGcGGCUGGGAucccuCgCGCCGggacGACCa -3'
miRNA:   3'- gGCGgC-CCGGCCCUu----G-GCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 201661 0.66 0.755222
Target:  5'- aCGaaCUGGGCCGcGAgcugcGCCGCCgGUGGCa -3'
miRNA:   3'- gGC--GGCCCGGCcCU-----UGGCGG-CACUGg -5'
13949 5' -63.3 NC_003521.1 + 181286 0.66 0.755222
Target:  5'- uCCaGCUGcaGCCGGGAagagaagcucagGCCGCCcgcgGGCCa -3'
miRNA:   3'- -GG-CGGCc-CGGCCCU------------UGGCGGca--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 137020 0.66 0.755222
Target:  5'- -gGCCGaGGcCCGGGcggucaauAACCGgCGgcUGACCu -3'
miRNA:   3'- ggCGGC-CC-GGCCC--------UUGGCgGC--ACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.