miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 28239 0.74 0.32934
Target:  5'- gCCGCCGuGGCCGuGAgcGCCGCC-UGGCg -3'
miRNA:   3'- -GGCGGC-CCGGCcCU--UGGCGGcACUGg -5'
13949 5' -63.3 NC_003521.1 + 42822 0.74 0.342345
Target:  5'- gCCGCCGGacagccaGCCGGGcgUCGCgGagGACCg -3'
miRNA:   3'- -GGCGGCC-------CGGCCCuuGGCGgCa-CUGG- -5'
13949 5' -63.3 NC_003521.1 + 203071 0.74 0.34304
Target:  5'- aCGCUGGgaGCCGGGGACCaGCCGcacaGACg -3'
miRNA:   3'- gGCGGCC--CGGCCCUUGG-CGGCa---CUGg -5'
13949 5' -63.3 NC_003521.1 + 145525 0.74 0.34304
Target:  5'- gCCGCCGaGGCCGaGGAGgCGCCcUGcaggcaGCCg -3'
miRNA:   3'- -GGCGGC-CCGGC-CCUUgGCGGcAC------UGG- -5'
13949 5' -63.3 NC_003521.1 + 112721 0.74 0.34304
Target:  5'- cCCGCCGGGCgCGcccaccaGGGCCGCCuG-GGCCg -3'
miRNA:   3'- -GGCGGCCCG-GCc------CUUGGCGG-CaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 43746 0.73 0.357146
Target:  5'- gCCGCCGcGGCCaGcacGGCCGCCGcgcUGGCCc -3'
miRNA:   3'- -GGCGGC-CCGGcCc--UUGGCGGC---ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 142565 0.73 0.357146
Target:  5'- cCCGCCaGGCuCGccgugcCCGCCGUGGCCg -3'
miRNA:   3'- -GGCGGcCCG-GCccuu--GGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 118528 0.73 0.357146
Target:  5'- gCCGCUGGuGCCGGcuACCGC-GUGAUCc -3'
miRNA:   3'- -GGCGGCC-CGGCCcuUGGCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 235269 0.73 0.370919
Target:  5'- uCCGCgGaGGCCaGGGGgaccgcuACCGCUGgGACCg -3'
miRNA:   3'- -GGCGgC-CCGG-CCCU-------UGGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 27205 0.73 0.371654
Target:  5'- cCCGCCGGGCgCGGaGcuCCGCUuGUGcaACCu -3'
miRNA:   3'- -GGCGGCCCG-GCC-CuuGGCGG-CAC--UGG- -5'
13949 5' -63.3 NC_003521.1 + 233381 0.73 0.379056
Target:  5'- gUCGCCGGGaUCcGGAGCUGCCGcuGCCg -3'
miRNA:   3'- -GGCGGCCC-GGcCCUUGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 3917 0.73 0.379056
Target:  5'- gCCGCCGaGGCagaCGGcGGCgGCCGUGGCa -3'
miRNA:   3'- -GGCGGC-CCG---GCCcUUGgCGGCACUGg -5'
13949 5' -63.3 NC_003521.1 + 223776 0.73 0.379056
Target:  5'- gCUGUCGGcGCCGuu-ACCGCCGUGgGCCg -3'
miRNA:   3'- -GGCGGCC-CGGCccuUGGCGGCAC-UGG- -5'
13949 5' -63.3 NC_003521.1 + 139153 0.73 0.385803
Target:  5'- cUCGCC-GGUgGGGuccacguGGCCGCCGUGAUCc -3'
miRNA:   3'- -GGCGGcCCGgCCC-------UUGGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 32890 0.73 0.386558
Target:  5'- gCCGCCGGuGCU----GCCGCCGUGcCCg -3'
miRNA:   3'- -GGCGGCC-CGGcccuUGGCGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 172330 0.73 0.386558
Target:  5'- gCCGUgGGGCaguuCGaGGAGcCCGCCGaGACCa -3'
miRNA:   3'- -GGCGgCCCG----GC-CCUU-GGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 79761 0.72 0.394156
Target:  5'- gCGCCGGGCCGGugaGGACCGgCGU--UCa -3'
miRNA:   3'- gGCGGCCCGGCC---CUUGGCgGCAcuGG- -5'
13949 5' -63.3 NC_003521.1 + 227195 0.72 0.394156
Target:  5'- uUCGCCgggGGGCCcggcgcggaGGGGGCCGCgGaGGCCg -3'
miRNA:   3'- -GGCGG---CCCGG---------CCCUUGGCGgCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 45909 0.72 0.401851
Target:  5'- gCGCCGGaccCCGcGGAGCCggcgGCgGUGGCCg -3'
miRNA:   3'- gGCGGCCc--GGC-CCUUGG----CGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 55511 0.72 0.40964
Target:  5'- cCCGCgGGcucGCCGGcGAGCCGCuCGgGGCUg -3'
miRNA:   3'- -GGCGgCC---CGGCC-CUUGGCG-GCaCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.