miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 105183 0.66 0.736815
Target:  5'- aCGCUGGGCCccccgccgaucguGGGAuCCGcCCGcGAgCu -3'
miRNA:   3'- gGCGGCCCGG-------------CCCUuGGC-GGCaCUgG- -5'
13949 5' -63.3 NC_003521.1 + 34292 0.66 0.7377
Target:  5'- uUCGCCcaGGGCCGugaGGGGCuCGCgCGUGuACa -3'
miRNA:   3'- -GGCGG--CCCGGC---CCUUG-GCG-GCAC-UGg -5'
13949 5' -63.3 NC_003521.1 + 10496 0.66 0.755222
Target:  5'- gCGCCGG--CGGGGAUgGC-GUGGCCc -3'
miRNA:   3'- gGCGGCCcgGCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 146666 0.66 0.726145
Target:  5'- aCGCgGcGGCCcaugacgucucucaGGGggUCGCCG-GACg -3'
miRNA:   3'- gGCGgC-CCGG--------------CCCuuGGCGGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 143420 0.66 0.761274
Target:  5'- uUCGCCuGGGCCaGGGcuCCuucggcgaggucugGCCGcucGACCg -3'
miRNA:   3'- -GGCGG-CCCGG-CCCuuGG--------------CGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 203684 0.66 0.726145
Target:  5'- gCGcCCGGGCCuugugcgacggccuGGGAGgCgugGCCGgGACCu -3'
miRNA:   3'- gGC-GGCCCGG--------------CCCUUgG---CGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 100438 0.66 0.780821
Target:  5'- gCGgCGGcGCuCGGGAgcaggGCCGCCGaagaagaguggUGACg -3'
miRNA:   3'- gGCgGCC-CG-GCCCU-----UGGCGGC-----------ACUGg -5'
13949 5' -63.3 NC_003521.1 + 114312 0.66 0.763853
Target:  5'- aCGCCGcGGaCCuGGGcuucuGCCGCC-UGGCg -3'
miRNA:   3'- gGCGGC-CC-GG-CCCu----UGGCGGcACUGg -5'
13949 5' -63.3 NC_003521.1 + 202308 0.66 0.772388
Target:  5'- uCCGCCGGcCCGacuucugcugcuGGAACUGCUGccgGugCu -3'
miRNA:   3'- -GGCGGCCcGGC------------CCUUGGCGGCa--CugG- -5'
13949 5' -63.3 NC_003521.1 + 123119 0.66 0.779982
Target:  5'- cUCGCCGGGCCGcuguacgaaguacGGcAGCgGCgCGUcggaaaagaagGGCCg -3'
miRNA:   3'- -GGCGGCCCGGC-------------CC-UUGgCG-GCA-----------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 137020 0.66 0.755222
Target:  5'- -gGCCGaGGcCCGGGcggucaauAACCGgCGgcUGACCu -3'
miRNA:   3'- ggCGGC-CC-GGCCC--------UUGGCgGC--ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 4624 0.66 0.780821
Target:  5'- aCG-CGGGCCGcgaugagcGAACCGCCGgcGGCg -3'
miRNA:   3'- gGCgGCCCGGCc-------CUUGGCGGCa-CUGg -5'
13949 5' -63.3 NC_003521.1 + 86590 0.66 0.7377
Target:  5'- aCGCCGcaGCCGGGGAagaagcgcUCGUgGUGGCg -3'
miRNA:   3'- gGCGGCc-CGGCCCUU--------GGCGgCACUGg -5'
13949 5' -63.3 NC_003521.1 + 31891 0.66 0.751744
Target:  5'- aCCGCCaGGCCGcggcacaGGAACUGCgGcaggcagcgcgcgaUGACUc -3'
miRNA:   3'- -GGCGGcCCGGC-------CCUUGGCGgC--------------ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 113527 0.66 0.755222
Target:  5'- gCGCaGcGGCUGGGAucccuCgCGCCGggacGACCa -3'
miRNA:   3'- gGCGgC-CCGGCCCUu----G-GCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 18695 0.66 0.763853
Target:  5'- uUCGCCauGGCCGGcgcGAuCCgGCUGUGGCUg -3'
miRNA:   3'- -GGCGGc-CCGGCC---CUuGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 200260 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 166080 0.66 0.74299
Target:  5'- cCCGCaGGGCCauagcGGGAGCgGgCCGgcagguucacgcgGGCCu -3'
miRNA:   3'- -GGCGgCCCGG-----CCCUUGgC-GGCa------------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 180094 0.66 0.772388
Target:  5'- gCCGCCGuucuuGCCcaacagcgucuGGGAGCCGUCGUcGucguCCa -3'
miRNA:   3'- -GGCGGCc----CGG-----------CCCUUGGCGGCA-Cu---GG- -5'
13949 5' -63.3 NC_003521.1 + 33642 0.66 0.727931
Target:  5'- gCCGUggagGGGCggccagcagagCGGGAuccagcgACCgGCCGUGGCCc -3'
miRNA:   3'- -GGCGg---CCCG-----------GCCCU-------UGG-CGGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.