Results 21 - 40 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 5' | -63.3 | NC_003521.1 | + | 120269 | 0.71 | 0.457439 |
Target: 5'- uCC-CCGGGCgcuccccCGGGAccgccgGCCGCCGagGGCCc -3' miRNA: 3'- -GGcGGCCCG-------GCCCU------UGGCGGCa-CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 141630 | 0.71 | 0.449953 |
Target: 5'- gCGCCGcGGCCGuc-ACCGaCGUGACCc -3' miRNA: 3'- gGCGGC-CCGGCccuUGGCgGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 203071 | 0.74 | 0.34304 |
Target: 5'- aCGCUGGgaGCCGGGGACCaGCCGcacaGACg -3' miRNA: 3'- gGCGGCC--CGGCCCUUGG-CGGCa---CUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 165912 | 0.74 | 0.309556 |
Target: 5'- gCUGCCGGGCCGacuccACCGCCGccACCg -3' miRNA: 3'- -GGCGGCCCGGCccu--UGGCGGCacUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 142277 | 0.75 | 0.296877 |
Target: 5'- -gGCuCGGGCUGGGAcccGCCGCCGcugcagcGGCCc -3' miRNA: 3'- ggCG-GCCCGGCCCU---UGGCGGCa------CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 118187 | 0.75 | 0.290691 |
Target: 5'- cCCGCCGGcaaaGUCGGG-GCCGCCGagcgcgcGGCCg -3' miRNA: 3'- -GGCGGCC----CGGCCCuUGGCGGCa------CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 239447 | 0.75 | 0.284605 |
Target: 5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3' miRNA: 3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 17746 | 0.75 | 0.284605 |
Target: 5'- uCgGCCGaGGCCGGGGaacuggccguACCGCCGgcggcgGACg -3' miRNA: 3'- -GgCGGC-CCGGCCCU----------UGGCGGCa-----CUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 28323 | 0.76 | 0.250199 |
Target: 5'- cCCGgCGcGGCCuGcGGACCGCCgGUGGCCg -3' miRNA: 3'- -GGCgGC-CCGGcC-CUUGGCGG-CACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 153077 | 0.78 | 0.191282 |
Target: 5'- gCCGCCggggcccGGGCCGGGGcccaccacGCCGCCG-GGCg -3' miRNA: 3'- -GGCGG-------CCCGGCCCU--------UGGCGGCaCUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 142565 | 0.73 | 0.357146 |
Target: 5'- cCCGCCaGGCuCGccgugcCCGCCGUGGCCg -3' miRNA: 3'- -GGCGGcCCG-GCccuu--GGCGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 233381 | 0.73 | 0.379056 |
Target: 5'- gUCGCCGGGaUCcGGAGCUGCCGcuGCCg -3' miRNA: 3'- -GGCGGCCC-GGcCCUUGGCGGCacUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 224529 | 0.71 | 0.449953 |
Target: 5'- gCCGCCGGGCCGGuaggcACC-CCGgcGCCc -3' miRNA: 3'- -GGCGGCCCGGCCcu---UGGcGGCacUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 129822 | 0.72 | 0.441714 |
Target: 5'- gUGCUGGGCCGccugcugcuGGGGCCcgugGCCGUGcCCu -3' miRNA: 3'- gGCGGCCCGGC---------CCUUGG----CGGCACuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 54148 | 0.72 | 0.441714 |
Target: 5'- aCCGCCGGcGuuGGaGAgGCCGCCGccuCCg -3' miRNA: 3'- -GGCGGCC-CggCC-CU-UGGCGGCacuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 36828 | 0.72 | 0.441714 |
Target: 5'- gCGCCacGGGCCGGc-GCUGCUGUG-CCg -3' miRNA: 3'- gGCGG--CCCGGCCcuUGGCGGCACuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 70093 | 0.72 | 0.425497 |
Target: 5'- uUGCCGcagggcaccuGGCCGGcGuGCCGCCGaagGGCCg -3' miRNA: 3'- gGCGGC----------CCGGCC-CuUGGCGGCa--CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 79761 | 0.72 | 0.394156 |
Target: 5'- gCGCCGGGCCGGugaGGACCGgCGU--UCa -3' miRNA: 3'- gGCGGCCCGGCC---CUUGGCgGCAcuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 32890 | 0.73 | 0.386558 |
Target: 5'- gCCGCCGGuGCU----GCCGCCGUGcCCg -3' miRNA: 3'- -GGCGGCC-CGGcccuUGGCGGCACuGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 223776 | 0.73 | 0.379056 |
Target: 5'- gCUGUCGGcGCCGuu-ACCGCCGUGgGCCg -3' miRNA: 3'- -GGCGGCC-CGGCccuUGGCGGCAC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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