miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 120269 0.71 0.457439
Target:  5'- uCC-CCGGGCgcuccccCGGGAccgccgGCCGCCGagGGCCc -3'
miRNA:   3'- -GGcGGCCCG-------GCCCU------UGGCGGCa-CUGG- -5'
13949 5' -63.3 NC_003521.1 + 32890 0.73 0.386558
Target:  5'- gCCGCCGGuGCU----GCCGCCGUGcCCg -3'
miRNA:   3'- -GGCGGCC-CGGcccuUGGCGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 79761 0.72 0.394156
Target:  5'- gCGCCGGGCCGGugaGGACCGgCGU--UCa -3'
miRNA:   3'- gGCGGCCCGGCC---CUUGGCgGCAcuGG- -5'
13949 5' -63.3 NC_003521.1 + 70093 0.72 0.425497
Target:  5'- uUGCCGcagggcaccuGGCCGGcGuGCCGCCGaagGGCCg -3'
miRNA:   3'- gGCGGC----------CCGGCC-CuUGGCGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 36828 0.72 0.441714
Target:  5'- gCGCCacGGGCCGGc-GCUGCUGUG-CCg -3'
miRNA:   3'- gGCGG--CCCGGCCcuUGGCGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 54148 0.72 0.441714
Target:  5'- aCCGCCGGcGuuGGaGAgGCCGCCGccuCCg -3'
miRNA:   3'- -GGCGGCC-CggCC-CU-UGGCGGCacuGG- -5'
13949 5' -63.3 NC_003521.1 + 129822 0.72 0.441714
Target:  5'- gUGCUGGGCCGccugcugcuGGGGCCcgugGCCGUGcCCu -3'
miRNA:   3'- gGCGGCCCGGC---------CCUUGG----CGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 224529 0.71 0.449953
Target:  5'- gCCGCCGGGCCGGuaggcACC-CCGgcGCCc -3'
miRNA:   3'- -GGCGGCCCGGCCcu---UGGcGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 141630 0.71 0.449953
Target:  5'- gCGCCGcGGCCGuc-ACCGaCGUGACCc -3'
miRNA:   3'- gGCGGC-CCGGCccuUGGCgGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 223776 0.73 0.379056
Target:  5'- gCUGUCGGcGCCGuu-ACCGCCGUGgGCCg -3'
miRNA:   3'- -GGCGGCC-CGGCccuUGGCGGCAC-UGG- -5'
13949 5' -63.3 NC_003521.1 + 233381 0.73 0.379056
Target:  5'- gUCGCCGGGaUCcGGAGCUGCCGcuGCCg -3'
miRNA:   3'- -GGCGGCCC-GGcCCUUGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 142565 0.73 0.357146
Target:  5'- cCCGCCaGGCuCGccgugcCCGCCGUGGCCg -3'
miRNA:   3'- -GGCGGcCCG-GCccuu--GGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 153077 0.78 0.191282
Target:  5'- gCCGCCggggcccGGGCCGGGGcccaccacGCCGCCG-GGCg -3'
miRNA:   3'- -GGCGG-------CCCGGCCCU--------UGGCGGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 28323 0.76 0.250199
Target:  5'- cCCGgCGcGGCCuGcGGACCGCCgGUGGCCg -3'
miRNA:   3'- -GGCgGC-CCGGcC-CUUGGCGG-CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 17746 0.75 0.284605
Target:  5'- uCgGCCGaGGCCGGGGaacuggccguACCGCCGgcggcgGACg -3'
miRNA:   3'- -GgCGGC-CCGGCCCU----------UGGCGGCa-----CUGg -5'
13949 5' -63.3 NC_003521.1 + 239447 0.75 0.284605
Target:  5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3'
miRNA:   3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 118187 0.75 0.290691
Target:  5'- cCCGCCGGcaaaGUCGGG-GCCGCCGagcgcgcGGCCg -3'
miRNA:   3'- -GGCGGCC----CGGCCCuUGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 142277 0.75 0.296877
Target:  5'- -gGCuCGGGCUGGGAcccGCCGCCGcugcagcGGCCc -3'
miRNA:   3'- ggCG-GCCCGGCCCU---UGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 165912 0.74 0.309556
Target:  5'- gCUGCCGGGCCGacuccACCGCCGccACCg -3'
miRNA:   3'- -GGCGGCCCGGCccu--UGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 203071 0.74 0.34304
Target:  5'- aCGCUGGgaGCCGGGGACCaGCCGcacaGACg -3'
miRNA:   3'- gGCGGCC--CGGCCCUUGG-CGGCa---CUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.