miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 17772 1.12 0.000856
Target:  5'- gCCGCCGGGCCGGGAACCGCCGUGACCg -3'
miRNA:   3'- -GGCGGCCCGGCCCUUGGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 43746 0.73 0.357146
Target:  5'- gCCGCCGcGGCCaGcacGGCCGCCGcgcUGGCCc -3'
miRNA:   3'- -GGCGGC-CCGGcCc--UUGGCGGC---ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 27205 0.73 0.371654
Target:  5'- cCCGCCGGGCgCGGaGcuCCGCUuGUGcaACCu -3'
miRNA:   3'- -GGCGGCCCG-GCC-CuuGGCGG-CAC--UGG- -5'
13949 5' -63.3 NC_003521.1 + 4624 0.66 0.780821
Target:  5'- aCG-CGGGCCGcgaugagcGAACCGCCGgcGGCg -3'
miRNA:   3'- gGCgGCCCGGCc-------CUUGGCGGCa-CUGg -5'
13949 5' -63.3 NC_003521.1 + 226334 0.78 0.179098
Target:  5'- gCCgGCCGcGGCCGGGGcgcGCCuUCGUGGCCg -3'
miRNA:   3'- -GG-CGGC-CCGGCCCU---UGGcGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 53469 0.76 0.255686
Target:  5'- cCUGCCGGgcgaGCCGGGccGCgCGCCGcUGGCCa -3'
miRNA:   3'- -GGCGGCC----CGGCCCu-UG-GCGGC-ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 27286 0.75 0.278621
Target:  5'- gCGCCGcGCCuGGAGCCucgguuucgauGCCGUGGCCc -3'
miRNA:   3'- gGCGGCcCGGcCCUUGG-----------CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 201869 0.75 0.284605
Target:  5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3'
miRNA:   3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 127405 0.74 0.327321
Target:  5'- aCCGCgccugCGGGCUGGGAcucaaccucaagacGCUGCUGgugGACCu -3'
miRNA:   3'- -GGCG-----GCCCGGCCCU--------------UGGCGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 118528 0.73 0.357146
Target:  5'- gCCGCUGGuGCCGGcuACCGC-GUGAUCc -3'
miRNA:   3'- -GGCGGCC-CGGCCcuUGGCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 42822 0.74 0.342345
Target:  5'- gCCGCCGGacagccaGCCGGGcgUCGCgGagGACCg -3'
miRNA:   3'- -GGCGGCC-------CGGCCCuuGGCGgCa-CUGG- -5'
13949 5' -63.3 NC_003521.1 + 137319 0.74 0.321979
Target:  5'- -aGCagGGGCCGGGcggugccugagucAGCCGCCGguuauUGACCg -3'
miRNA:   3'- ggCGg-CCCGGCCC-------------UUGGCGGC-----ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 117502 0.87 0.04819
Target:  5'- gCGgCGGcGCCGGGAGCCGCCGcGGCCg -3'
miRNA:   3'- gGCgGCC-CGGCCCUUGGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 145525 0.74 0.34304
Target:  5'- gCCGCCGaGGCCGaGGAGgCGCCcUGcaggcaGCCg -3'
miRNA:   3'- -GGCGGC-CCGGC-CCUUgGCGGcAC------UGG- -5'
13949 5' -63.3 NC_003521.1 + 227369 0.84 0.072986
Target:  5'- gCGCCaGGGCUGGGAACCGCUcaGUGGCUc -3'
miRNA:   3'- gGCGG-CCCGGCCCUUGGCGG--CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 146796 0.75 0.284605
Target:  5'- gCCGCCGGagggacCCGGGuggAGCCGCCGUuucugcgggucGGCCg -3'
miRNA:   3'- -GGCGGCCc-----GGCCC---UUGGCGGCA-----------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 112721 0.74 0.34304
Target:  5'- cCCGCCGGGCgCGcccaccaGGGCCGCCuG-GGCCg -3'
miRNA:   3'- -GGCGGCCCG-GCc------CUUGGCGG-CaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 235269 0.73 0.370919
Target:  5'- uCCGCgGaGGCCaGGGGgaccgcuACCGCUGgGACCg -3'
miRNA:   3'- -GGCGgC-CCGG-CCCU-------UGGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 215105 0.78 0.177472
Target:  5'- cUCGCCGGGCagcaaacagcauGGAACCGCCGUcGCCg -3'
miRNA:   3'- -GGCGGCCCGgc----------CCUUGGCGGCAcUGG- -5'
13949 5' -63.3 NC_003521.1 + 111430 0.76 0.261271
Target:  5'- gUCGCCGGGgCGGccgcgcuaugcGGACCGucCCGUGGCCc -3'
miRNA:   3'- -GGCGGCCCgGCC-----------CUUGGC--GGCACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.