miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 166080 0.66 0.74299
Target:  5'- cCCGCaGGGCCauagcGGGAGCgGgCCGgcagguucacgcgGGCCu -3'
miRNA:   3'- -GGCGgCCCGG-----CCCUUGgC-GGCa------------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 105183 0.66 0.736815
Target:  5'- aCGCUGGGCCccccgccgaucguGGGAuCCGcCCGcGAgCu -3'
miRNA:   3'- gGCGGCCCGG-------------CCCUuGGC-GGCaCUgG- -5'
13949 5' -63.3 NC_003521.1 + 33642 0.66 0.727931
Target:  5'- gCCGUggagGGGCggccagcagagCGGGAuccagcgACCgGCCGUGGCCc -3'
miRNA:   3'- -GGCGg---CCCG-----------GCCCU-------UGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 204127 0.66 0.745625
Target:  5'- cCUGCuCGGGCCaggcgccGGAGCCcggccucagcucgGCCGaGACCc -3'
miRNA:   3'- -GGCG-GCCCGGc------CCUUGG-------------CGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 34292 0.66 0.7377
Target:  5'- uUCGCCcaGGGCCGugaGGGGCuCGCgCGUGuACa -3'
miRNA:   3'- -GGCGG--CCCGGC---CCUUG-GCG-GCAC-UGg -5'
13949 5' -63.3 NC_003521.1 + 162363 0.66 0.728822
Target:  5'- gCGCCGGGCCGcGuucCCaGCCGc-GCCg -3'
miRNA:   3'- gGCGGCCCGGCcCuu-GG-CGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 77249 0.66 0.755222
Target:  5'- uCgGCgGGGUccaCGGGGuacucGCCGCCGggcACCa -3'
miRNA:   3'- -GgCGgCCCG---GCCCU-----UGGCGGCac-UGG- -5'
13949 5' -63.3 NC_003521.1 + 60692 0.66 0.746502
Target:  5'- gCCGCgCGGGggacCCGGGGGCgGCgCGggucGcACCa -3'
miRNA:   3'- -GGCG-GCCC----GGCCCUUGgCG-GCa---C-UGG- -5'
13949 5' -63.3 NC_003521.1 + 178673 0.66 0.754354
Target:  5'- aCGCUGGaacaCCGGGuggucgcGGCCGCUcagguaccagGUGACCu -3'
miRNA:   3'- gGCGGCCc---GGCCC-------UUGGCGG----------CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 119901 0.66 0.727931
Target:  5'- cCCGCgggUGGGCCuGGAACagguggaUGCCGcUGACg -3'
miRNA:   3'- -GGCG---GCCCGGcCCUUG-------GCGGC-ACUGg -5'
13949 5' -63.3 NC_003521.1 + 200260 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 100584 0.66 0.746502
Target:  5'- aCCGCCguagGGGCCGGuGGACgaggcggcgaagCGUCucuUGGCCg -3'
miRNA:   3'- -GGCGG----CCCGGCC-CUUG------------GCGGc--ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 88066 0.66 0.746502
Target:  5'- gUCGCgGuGGUCGGcGGCgC-CCGUGACCa -3'
miRNA:   3'- -GGCGgC-CCGGCCcUUG-GcGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 117053 0.66 0.728822
Target:  5'- uUCGCCcgaggcGGCCGcGGAGCCGgCGgucacGCCg -3'
miRNA:   3'- -GGCGGc-----CCGGC-CCUUGGCgGCac---UGG- -5'
13949 5' -63.3 NC_003521.1 + 86590 0.66 0.7377
Target:  5'- aCGCCGcaGCCGGGGAagaagcgcUCGUgGUGGCg -3'
miRNA:   3'- gGCGGCc-CGGCCCUU--------GGCGgCACUGg -5'
13949 5' -63.3 NC_003521.1 + 3657 0.66 0.728822
Target:  5'- gCCGCCGucugccucggcGGCCGGGAcccUCGUCGgaugcUGACg -3'
miRNA:   3'- -GGCGGC-----------CCGGCCCUu--GGCGGC-----ACUGg -5'
13949 5' -63.3 NC_003521.1 + 4624 0.66 0.780821
Target:  5'- aCG-CGGGCCGcgaugagcGAACCGCCGgcGGCg -3'
miRNA:   3'- gGCgGCCCGGCc-------CUUGGCGGCa-CUGg -5'
13949 5' -63.3 NC_003521.1 + 24401 0.66 0.746502
Target:  5'- gCGCCGGGcCCGcGGAGCauagaaaGCCa-GACg -3'
miRNA:   3'- gGCGGCCC-GGC-CCUUGg------CGGcaCUGg -5'
13949 5' -63.3 NC_003521.1 + 31891 0.66 0.751744
Target:  5'- aCCGCCaGGCCGcggcacaGGAACUGCgGcaggcagcgcgcgaUGACUc -3'
miRNA:   3'- -GGCGGcCCGGC-------CCUUGGCGgC--------------ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 39014 0.66 0.746502
Target:  5'- -gGCCGGaG-CGGGcGCCGCCGaagGAUUg -3'
miRNA:   3'- ggCGGCC-CgGCCCuUGGCGGCa--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.