Results 1 - 20 of 303 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13949 | 5' | -63.3 | NC_003521.1 | + | 17772 | 1.12 | 0.000856 |
Target: 5'- gCCGCCGGGCCGGGAACCGCCGUGACCg -3' miRNA: 3'- -GGCGGCCCGGCCCUUGGCGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 117502 | 0.87 | 0.04819 |
Target: 5'- gCGgCGGcGCCGGGAGCCGCCGcGGCCg -3' miRNA: 3'- gGCgGCC-CGGCCCUUGGCGGCaCUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 227369 | 0.84 | 0.072986 |
Target: 5'- gCGCCaGGGCUGGGAACCGCUcaGUGGCUc -3' miRNA: 3'- gGCGG-CCCGGCCCUUGGCGG--CACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 45296 | 0.8 | 0.138944 |
Target: 5'- gCCGCUGGGCCaGGAGCCGgagcCCGagcUGGCCg -3' miRNA: 3'- -GGCGGCCCGGcCCUUGGC----GGC---ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 153077 | 0.78 | 0.191282 |
Target: 5'- gCCGCCggggcccGGGCCGGGGcccaccacGCCGCCG-GGCg -3' miRNA: 3'- -GGCGG-------CCCGGCCCU--------UGGCGGCaCUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 226334 | 0.78 | 0.179098 |
Target: 5'- gCCgGCCGcGGCCGGGGcgcGCCuUCGUGGCCg -3' miRNA: 3'- -GG-CGGC-CCGGCCCU---UGGcGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 215105 | 0.78 | 0.177472 |
Target: 5'- cUCGCCGGGCagcaaacagcauGGAACCGCCGUcGCCg -3' miRNA: 3'- -GGCGGCCCGgc----------CCUUGGCGGCAcUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 28323 | 0.76 | 0.250199 |
Target: 5'- cCCGgCGcGGCCuGcGGACCGCCgGUGGCCg -3' miRNA: 3'- -GGCgGC-CCGGcC-CUUGGCGG-CACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 53469 | 0.76 | 0.255686 |
Target: 5'- cCUGCCGGgcgaGCCGGGccGCgCGCCGcUGGCCa -3' miRNA: 3'- -GGCGGCC----CGGCCCu-UG-GCGGC-ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 111430 | 0.76 | 0.261271 |
Target: 5'- gUCGCCGGGgCGGccgcgcuaugcGGACCGucCCGUGGCCc -3' miRNA: 3'- -GGCGGCCCgGCC-----------CUUGGC--GGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 239447 | 0.75 | 0.284605 |
Target: 5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3' miRNA: 3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 27286 | 0.75 | 0.278621 |
Target: 5'- gCGCCGcGCCuGGAGCCucgguuucgauGCCGUGGCCc -3' miRNA: 3'- gGCGGCcCGGcCCUUGG-----------CGGCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 146796 | 0.75 | 0.284605 |
Target: 5'- gCCGCCGGagggacCCGGGuggAGCCGCCGUuucugcgggucGGCCg -3' miRNA: 3'- -GGCGGCCc-----GGCCC---UUGGCGGCA-----------CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 17746 | 0.75 | 0.284605 |
Target: 5'- uCgGCCGaGGCCGGGGaacuggccguACCGCCGgcggcgGACg -3' miRNA: 3'- -GgCGGC-CCGGCCCU----------UGGCGGCa-----CUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 142277 | 0.75 | 0.296877 |
Target: 5'- -gGCuCGGGCUGGGAcccGCCGCCGcugcagcGGCCc -3' miRNA: 3'- ggCG-GCCCGGCCCU---UGGCGGCa------CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 118187 | 0.75 | 0.290691 |
Target: 5'- cCCGCCGGcaaaGUCGGG-GCCGCCGagcgcgcGGCCg -3' miRNA: 3'- -GGCGGCC----CGGCCCuUGGCGGCa------CUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 201869 | 0.75 | 0.284605 |
Target: 5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3' miRNA: 3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 137319 | 0.74 | 0.321979 |
Target: 5'- -aGCagGGGCCGGGcggugccugagucAGCCGCCGguuauUGACCg -3' miRNA: 3'- ggCGg-CCCGGCCC-------------UUGGCGGC-----ACUGG- -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 203071 | 0.74 | 0.34304 |
Target: 5'- aCGCUGGgaGCCGGGGACCaGCCGcacaGACg -3' miRNA: 3'- gGCGGCC--CGGCCCUUGG-CGGCa---CUGg -5' |
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13949 | 5' | -63.3 | NC_003521.1 | + | 165912 | 0.74 | 0.309556 |
Target: 5'- gCUGCCGGGCCGacuccACCGCCGccACCg -3' miRNA: 3'- -GGCGGCCCGGCccu--UGGCGGCacUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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