miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 17772 1.12 0.000856
Target:  5'- gCCGCCGGGCCGGGAACCGCCGUGACCg -3'
miRNA:   3'- -GGCGGCCCGGCCCUUGGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 117502 0.87 0.04819
Target:  5'- gCGgCGGcGCCGGGAGCCGCCGcGGCCg -3'
miRNA:   3'- gGCgGCC-CGGCCCUUGGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 227369 0.84 0.072986
Target:  5'- gCGCCaGGGCUGGGAACCGCUcaGUGGCUc -3'
miRNA:   3'- gGCGG-CCCGGCCCUUGGCGG--CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 45296 0.8 0.138944
Target:  5'- gCCGCUGGGCCaGGAGCCGgagcCCGagcUGGCCg -3'
miRNA:   3'- -GGCGGCCCGGcCCUUGGC----GGC---ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 215105 0.78 0.177472
Target:  5'- cUCGCCGGGCagcaaacagcauGGAACCGCCGUcGCCg -3'
miRNA:   3'- -GGCGGCCCGgc----------CCUUGGCGGCAcUGG- -5'
13949 5' -63.3 NC_003521.1 + 226334 0.78 0.179098
Target:  5'- gCCgGCCGcGGCCGGGGcgcGCCuUCGUGGCCg -3'
miRNA:   3'- -GG-CGGC-CCGGCCCU---UGGcGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 153077 0.78 0.191282
Target:  5'- gCCGCCggggcccGGGCCGGGGcccaccacGCCGCCG-GGCg -3'
miRNA:   3'- -GGCGG-------CCCGGCCCU--------UGGCGGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 28323 0.76 0.250199
Target:  5'- cCCGgCGcGGCCuGcGGACCGCCgGUGGCCg -3'
miRNA:   3'- -GGCgGC-CCGGcC-CUUGGCGG-CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 53469 0.76 0.255686
Target:  5'- cCUGCCGGgcgaGCCGGGccGCgCGCCGcUGGCCa -3'
miRNA:   3'- -GGCGGCC----CGGCCCu-UG-GCGGC-ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 111430 0.76 0.261271
Target:  5'- gUCGCCGGGgCGGccgcgcuaugcGGACCGucCCGUGGCCc -3'
miRNA:   3'- -GGCGGCCCgGCC-----------CUUGGC--GGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 27286 0.75 0.278621
Target:  5'- gCGCCGcGCCuGGAGCCucgguuucgauGCCGUGGCCc -3'
miRNA:   3'- gGCGGCcCGGcCCUUGG-----------CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 239447 0.75 0.284605
Target:  5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3'
miRNA:   3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 201869 0.75 0.284605
Target:  5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3'
miRNA:   3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 146796 0.75 0.284605
Target:  5'- gCCGCCGGagggacCCGGGuggAGCCGCCGUuucugcgggucGGCCg -3'
miRNA:   3'- -GGCGGCCc-----GGCCC---UUGGCGGCA-----------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 17746 0.75 0.284605
Target:  5'- uCgGCCGaGGCCGGGGaacuggccguACCGCCGgcggcgGACg -3'
miRNA:   3'- -GgCGGC-CCGGCCCU----------UGGCGGCa-----CUGg -5'
13949 5' -63.3 NC_003521.1 + 118187 0.75 0.290691
Target:  5'- cCCGCCGGcaaaGUCGGG-GCCGCCGagcgcgcGGCCg -3'
miRNA:   3'- -GGCGGCC----CGGCCCuUGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 142277 0.75 0.296877
Target:  5'- -gGCuCGGGCUGGGAcccGCCGCCGcugcagcGGCCc -3'
miRNA:   3'- ggCG-GCCCGGCCCU---UGGCGGCa------CUGG- -5'
13949 5' -63.3 NC_003521.1 + 165912 0.74 0.309556
Target:  5'- gCUGCCGGGCCGacuccACCGCCGccACCg -3'
miRNA:   3'- -GGCGGCCCGGCccu--UGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 137319 0.74 0.321979
Target:  5'- -aGCagGGGCCGGGcggugccugagucAGCCGCCGguuauUGACCg -3'
miRNA:   3'- ggCGg-CCCGGCCC-------------UUGGCGGC-----ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 127405 0.74 0.327321
Target:  5'- aCCGCgccugCGGGCUGGGAcucaaccucaagacGCUGCUGgugGACCu -3'
miRNA:   3'- -GGCG-----GCCCGGCCCU--------------UGGCGGCa--CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.