miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 209 0.69 0.554556
Target:  5'- cCCGCCGcacgccGCCGcGGaAACCGguuCCGUGACUc -3'
miRNA:   3'- -GGCGGCc-----CGGC-CC-UUGGC---GGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 437 0.68 0.618863
Target:  5'- aCGUguuuCGGGCCGGcGggUCGUCGcgggGACUg -3'
miRNA:   3'- gGCG----GCCCGGCC-CuuGGCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 507 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 710 0.67 0.674357
Target:  5'- gCUGCCucaccGGCUGGcuuACCGCCGgcuUGGCCu -3'
miRNA:   3'- -GGCGGc----CCGGCCcu-UGGCGGC---ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 1327 0.66 0.772388
Target:  5'- cCCGCCGauGGUCGGucGAGCUGuacgcguuguCCGUGuCCg -3'
miRNA:   3'- -GGCGGC--CCGGCC--CUUGGC----------GGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 3657 0.66 0.728822
Target:  5'- gCCGCCGucugccucggcGGCCGGGAcccUCGUCGgaugcUGACg -3'
miRNA:   3'- -GGCGGC-----------CCGGCCCUu--GGCGGC-----ACUGg -5'
13949 5' -63.3 NC_003521.1 + 3917 0.73 0.379056
Target:  5'- gCCGCCGaGGCagaCGGcGGCgGCCGUGGCa -3'
miRNA:   3'- -GGCGGC-CCG---GCCcUUGgCGGCACUGg -5'
13949 5' -63.3 NC_003521.1 + 4624 0.66 0.780821
Target:  5'- aCG-CGGGCCGcgaugagcGAACCGCCGgcGGCg -3'
miRNA:   3'- gGCgGCCCGGCc-------CUUGGCGGCa-CUGg -5'
13949 5' -63.3 NC_003521.1 + 6500 0.7 0.545506
Target:  5'- uCCGCgGGagcGCCGGucuccauucGGACCGCCGUcauGCCg -3'
miRNA:   3'- -GGCGgCC---CGGCC---------CUUGGCGGCAc--UGG- -5'
13949 5' -63.3 NC_003521.1 + 10496 0.66 0.755222
Target:  5'- gCGCCGG--CGGGGAUgGC-GUGGCCc -3'
miRNA:   3'- gGCGGCCcgGCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 12851 0.67 0.701806
Target:  5'- aCGCUGGucguGgUGGGuGCCGCCGUGguggucgguuugGCCa -3'
miRNA:   3'- gGCGGCC----CgGCCCuUGGCGGCAC------------UGG- -5'
13949 5' -63.3 NC_003521.1 + 17746 0.75 0.284605
Target:  5'- uCgGCCGaGGCCGGGGaacuggccguACCGCCGgcggcgGACg -3'
miRNA:   3'- -GgCGGC-CCGGCCCU----------UGGCGGCa-----CUGg -5'
13949 5' -63.3 NC_003521.1 + 17772 1.12 0.000856
Target:  5'- gCCGCCGGGCCGGGAACCGCCGUGACCg -3'
miRNA:   3'- -GGCGGCCCGGCCCUUGGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 18695 0.66 0.763853
Target:  5'- uUCGCCauGGCCGGcgcGAuCCgGCUGUGGCUg -3'
miRNA:   3'- -GGCGGc-CCGGCC---CUuGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 24401 0.66 0.746502
Target:  5'- gCGCCGGGcCCGcGGAGCauagaaaGCCa-GACg -3'
miRNA:   3'- gGCGGCCC-GGC-CCUUGg------CGGcaCUGg -5'
13949 5' -63.3 NC_003521.1 + 24442 0.69 0.609609
Target:  5'- gCCGgCGGGCUcGGAAcagguCCGCgCG-GACCa -3'
miRNA:   3'- -GGCgGCCCGGcCCUU-----GGCG-GCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 27205 0.73 0.371654
Target:  5'- cCCGCCGGGCgCGGaGcuCCGCUuGUGcaACCu -3'
miRNA:   3'- -GGCGGCCCG-GCC-CuuGGCGG-CAC--UGG- -5'
13949 5' -63.3 NC_003521.1 + 27286 0.75 0.278621
Target:  5'- gCGCCGcGCCuGGAGCCucgguuucgauGCCGUGGCCc -3'
miRNA:   3'- gGCGGCcCGGcCCUUGG-----------CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 28239 0.74 0.32934
Target:  5'- gCCGCCGuGGCCGuGAgcGCCGCC-UGGCg -3'
miRNA:   3'- -GGCGGC-CCGGCcCU--UGGCGGcACUGg -5'
13949 5' -63.3 NC_003521.1 + 28323 0.76 0.250199
Target:  5'- cCCGgCGcGGCCuGcGGACCGCCgGUGGCCg -3'
miRNA:   3'- -GGCgGC-CCGGcC-CUUGGCGG-CACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.