miRNA display CGI


Results 1 - 20 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 241056 0.66 0.732382
Target:  5'- uUGCCGuGGCCGGGAucggugagucacggaACCGguuuCCGcGGCg -3'
miRNA:   3'- gGCGGC-CCGGCCCU---------------UGGC----GGCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 240986 0.68 0.618863
Target:  5'- aCGUguuuCGGGCCGGcGggUCGUCGcgggGACUg -3'
miRNA:   3'- gGCG----GCCCGGCC-CuuGGCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 240758 0.69 0.554556
Target:  5'- cCCGCCGcacgccGCCGcGGaAACCGguuCCGUGACUc -3'
miRNA:   3'- -GGCGGCc-----CGGC-CC-UUGGC---GGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 240040 0.69 0.572782
Target:  5'- gCGCCGGG-CGGuccuCCGCCGaUGGCg -3'
miRNA:   3'- gGCGGCCCgGCCcuu-GGCGGC-ACUGg -5'
13949 5' -63.3 NC_003521.1 + 239654 0.66 0.755222
Target:  5'- aCGaaCUGGGCCGcGAgcugcGCCGCCgGUGGCa -3'
miRNA:   3'- gGC--GGCCCGGCcCU-----UGGCGG-CACUGg -5'
13949 5' -63.3 NC_003521.1 + 239447 0.75 0.284605
Target:  5'- -aGCgCGGGCuCGGGGACaGCgGUGGCCc -3'
miRNA:   3'- ggCG-GCCCG-GCCCUUGgCGgCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 239346 0.69 0.554556
Target:  5'- gUCGuCCGGGCgucugcagCGGGAugC-CCGUGugCu -3'
miRNA:   3'- -GGC-GGCCCG--------GCCCUugGcGGCACugG- -5'
13949 5' -63.3 NC_003521.1 + 239008 0.66 0.772388
Target:  5'- uCCGCCGGcCCGacuucugcugcuGGAACUGCUGccgGugCu -3'
miRNA:   3'- -GGCGGCCcGGC------------CCUUGGCGGCa--CugG- -5'
13949 5' -63.3 NC_003521.1 + 238999 0.67 0.719876
Target:  5'- uCCGCCauGCUGaGGAGaCGUCGUGGCUg -3'
miRNA:   3'- -GGCGGccCGGC-CCUUgGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 238761 0.66 0.772388
Target:  5'- gCGCCGGccuCCuGGGGCUGCUGacccugGGCCg -3'
miRNA:   3'- gGCGGCCc--GGcCCUUGGCGGCa-----CUGG- -5'
13949 5' -63.3 NC_003521.1 + 235269 0.73 0.370919
Target:  5'- uCCGCgGaGGCCaGGGGgaccgcuACCGCUGgGACCg -3'
miRNA:   3'- -GGCGgC-CCGG-CCCU-------UGGCGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 235073 0.69 0.58195
Target:  5'- cCCGacgaCGaGGCCGaGGAGCCcgacgaguaaGCCGUGcCCc -3'
miRNA:   3'- -GGCg---GC-CCGGC-CCUUGG----------CGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 234287 0.67 0.701806
Target:  5'- cCUGCCcuGGGgCGGGAcgcagACCGCCcucgucaccgGUGAgCCu -3'
miRNA:   3'- -GGCGG--CCCgGCCCU-----UGGCGG----------CACU-GG- -5'
13949 5' -63.3 NC_003521.1 + 233689 0.71 0.458275
Target:  5'- gCGUCGaGGCCGucGGAGCCaCCGgGGCCa -3'
miRNA:   3'- gGCGGC-CCGGC--CCUUGGcGGCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 233381 0.73 0.379056
Target:  5'- gUCGCCGGGaUCcGGAGCUGCCGcuGCCg -3'
miRNA:   3'- -GGCGGCCC-GGcCCUUGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 233165 0.69 0.609609
Target:  5'- aCCGCUGuccgcgccGCCGuGGcGGCCGCCGUuACCg -3'
miRNA:   3'- -GGCGGCc-------CGGC-CC-UUGGCGGCAcUGG- -5'
13949 5' -63.3 NC_003521.1 + 233129 0.68 0.637391
Target:  5'- aUCGCCGcggugucgcGGCCGGGAGgguCCGCgGcGGCg -3'
miRNA:   3'- -GGCGGC---------CCGGCCCUU---GGCGgCaCUGg -5'
13949 5' -63.3 NC_003521.1 + 229796 0.68 0.665142
Target:  5'- gCgGCCGGugcgaCCGGcuuCUGCUGUGACCa -3'
miRNA:   3'- -GgCGGCCc----GGCCcuuGGCGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 227891 0.68 0.645727
Target:  5'- gCCGCuCGGGCCGccguguuGGAggGCCGaCCGgcGCCc -3'
miRNA:   3'- -GGCG-GCCCGGC-------CCU--UGGC-GGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 227369 0.84 0.072986
Target:  5'- gCGCCaGGGCUGGGAACCGCUcaGUGGCUc -3'
miRNA:   3'- gGCGG-CCCGGCCCUUGGCGG--CACUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.