miRNA display CGI


Results 21 - 40 of 303 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13949 5' -63.3 NC_003521.1 + 28418 0.68 0.618863
Target:  5'- gUCG-CGGGCaUGGucGCCGCCGUcGCCa -3'
miRNA:   3'- -GGCgGCCCG-GCCcuUGGCGGCAcUGG- -5'
13949 5' -63.3 NC_003521.1 + 28574 0.68 0.668831
Target:  5'- -gGCCGcGCCGGGGucgcuGCCGCUgcucucguugucgguGUGGCUg -3'
miRNA:   3'- ggCGGCcCGGCCCU-----UGGCGG---------------CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 30526 0.67 0.692696
Target:  5'- cCCGCCaGGGUcagcuggccaCGGcAACCGCgCG-GACCu -3'
miRNA:   3'- -GGCGG-CCCG----------GCCcUUGGCG-GCaCUGG- -5'
13949 5' -63.3 NC_003521.1 + 31733 0.66 0.772388
Target:  5'- aCGCCGcGGCCaccgccuCCGCCGccucGACCg -3'
miRNA:   3'- gGCGGC-CCGGcccuu--GGCGGCa---CUGG- -5'
13949 5' -63.3 NC_003521.1 + 31891 0.66 0.751744
Target:  5'- aCCGCCaGGCCGcggcacaGGAACUGCgGcaggcagcgcgcgaUGACUc -3'
miRNA:   3'- -GGCGGcCCGGC-------CCUUGGCGgC--------------ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 32352 0.67 0.699988
Target:  5'- uUGCCGGaGCCGgcgggacGGGGCUuuuggugGCgCGUGGCCa -3'
miRNA:   3'- gGCGGCC-CGGC-------CCUUGG-------CG-GCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 32890 0.73 0.386558
Target:  5'- gCCGCCGGuGCU----GCCGCCGUGcCCg -3'
miRNA:   3'- -GGCGGCC-CGGcccuUGGCGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 33062 0.7 0.527554
Target:  5'- aCCGCCguaugcuggaGGGCgCGGGucucUCGCCGUGAg- -3'
miRNA:   3'- -GGCGG----------CCCG-GCCCuu--GGCGGCACUgg -5'
13949 5' -63.3 NC_003521.1 + 33205 0.68 0.618863
Target:  5'- gUGCa-GGCCGGcGAGCCGCCcaGACg -3'
miRNA:   3'- gGCGgcCCGGCC-CUUGGCGGcaCUGg -5'
13949 5' -63.3 NC_003521.1 + 33642 0.66 0.727931
Target:  5'- gCCGUggagGGGCggccagcagagCGGGAuccagcgACCgGCCGUGGCCc -3'
miRNA:   3'- -GGCGg---CCCG-----------GCCCU-------UGG-CGGCACUGG- -5'
13949 5' -63.3 NC_003521.1 + 34292 0.66 0.7377
Target:  5'- uUCGCCcaGGGCCGugaGGGGCuCGCgCGUGuACa -3'
miRNA:   3'- -GGCGG--CCCGGC---CCUUG-GCG-GCAC-UGg -5'
13949 5' -63.3 NC_003521.1 + 34452 0.71 0.492354
Target:  5'- gCGCugCGGGCCuGGGggUCGUCGccgcaGGCCa -3'
miRNA:   3'- gGCG--GCCCGG-CCCuuGGCGGCa----CUGG- -5'
13949 5' -63.3 NC_003521.1 + 36276 0.67 0.719876
Target:  5'- gUCGUgGGGCCGccaccuccGucGCCGUCGcUGACCa -3'
miRNA:   3'- -GGCGgCCCGGC--------CcuUGGCGGC-ACUGG- -5'
13949 5' -63.3 NC_003521.1 + 36828 0.72 0.441714
Target:  5'- gCGCCacGGGCCGGc-GCUGCUGUG-CCg -3'
miRNA:   3'- gGCGG--CCCGGCCcuUGGCGGCACuGG- -5'
13949 5' -63.3 NC_003521.1 + 37811 0.69 0.554556
Target:  5'- aCCGCCGaacccgucuuGGCgGGcGAGCCGCCcggaGACUg -3'
miRNA:   3'- -GGCGGC----------CCGgCC-CUUGGCGGca--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 38222 0.67 0.673437
Target:  5'- gCGCCgauguagGGGCCGaGGAGagcauugaCGCCgGUGAUCu -3'
miRNA:   3'- gGCGG-------CCCGGC-CCUUg-------GCGG-CACUGG- -5'
13949 5' -63.3 NC_003521.1 + 39014 0.66 0.746502
Target:  5'- -gGCCGGaG-CGGGcGCCGCCGaagGAUUg -3'
miRNA:   3'- ggCGGCC-CgGCCCuUGGCGGCa--CUGG- -5'
13949 5' -63.3 NC_003521.1 + 39859 0.67 0.674357
Target:  5'- gCCGCCacccaGGGCa--GGACCGCCGacGCCg -3'
miRNA:   3'- -GGCGG-----CCCGgccCUUGGCGGCacUGG- -5'
13949 5' -63.3 NC_003521.1 + 42289 0.66 0.746502
Target:  5'- gCUGCgUGGuGCCGGcGGcgucugucguGCCGCCGUGuuGCUg -3'
miRNA:   3'- -GGCG-GCC-CGGCC-CU----------UGGCGGCAC--UGG- -5'
13949 5' -63.3 NC_003521.1 + 42460 0.7 0.536504
Target:  5'- gCCGCUGGcCCaGGGAAaCGCCGUG-CUg -3'
miRNA:   3'- -GGCGGCCcGG-CCCUUgGCGGCACuGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.