miRNA display CGI


Results 61 - 80 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 27314 0.67 0.721984
Target:  5'- cGCugGugaaacgcuacuuUCGGCC-CCuGCGCCGcGCc -3'
miRNA:   3'- aCGugC-------------AGCCGGuGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 44220 0.67 0.721984
Target:  5'- aGCAUGUCGagcagcaGCCGCCGGUGaUCGUcGCc -3'
miRNA:   3'- aCGUGCAGC-------CGGUGGUCGC-GGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 137764 0.67 0.721984
Target:  5'- cUGCACGUcccagaccucgCGGCgccgcgacaCGCCGGCGCCcuuccacucgucgGUGCg -3'
miRNA:   3'- -ACGUGCA-----------GCCG---------GUGGUCGCGG-------------CACGa -5'
13950 5' -61.7 NC_003521.1 + 225150 0.67 0.713574
Target:  5'- uUGCGgacccaGUCGcgcaCCACCucGGCGCUGUGCUg -3'
miRNA:   3'- -ACGUg-----CAGCc---GGUGG--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 124029 0.67 0.713574
Target:  5'- gGUGCGUcagCGGCUGCuUGGCGuuGUGCUu -3'
miRNA:   3'- aCGUGCA---GCCGGUG-GUCGCggCACGA- -5'
13950 5' -61.7 NC_003521.1 + 68423 0.67 0.713574
Target:  5'- cGCgGCGaCGGCUccGCCGGCGCCccucaaccgcGUGCc -3'
miRNA:   3'- aCG-UGCaGCCGG--UGGUCGCGG----------CACGa -5'
13950 5' -61.7 NC_003521.1 + 142672 0.67 0.713574
Target:  5'- gGUgACGUUGGCCagggcgGCCAGgGCCGcgGCc -3'
miRNA:   3'- aCG-UGCAGCCGG------UGGUCgCGGCa-CGa -5'
13950 5' -61.7 NC_003521.1 + 42875 0.67 0.713574
Target:  5'- gGCgACGgc-GCCGCCGGCGgCCGUGgUa -3'
miRNA:   3'- aCG-UGCagcCGGUGGUCGC-GGCACgA- -5'
13950 5' -61.7 NC_003521.1 + 129216 0.67 0.713574
Target:  5'- gGCGCGUggugGGCaguCCGGCGCCGcugGCc -3'
miRNA:   3'- aCGUGCAg---CCGgu-GGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 73503 0.67 0.713574
Target:  5'- aGCGCGUgucgauggagagCGGCgCGCagaGGCGCCGcagGCg -3'
miRNA:   3'- aCGUGCA------------GCCG-GUGg--UCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 152765 0.67 0.713574
Target:  5'- cGCGCGgaaCGGCguCGCCuccuGCGCCuUGCg -3'
miRNA:   3'- aCGUGCa--GCCG--GUGGu---CGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 88136 0.67 0.713574
Target:  5'- cGC-CaaCGGCCugGCCAGCGCC-UGCg -3'
miRNA:   3'- aCGuGcaGCCGG--UGGUCGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 235552 0.67 0.710759
Target:  5'- aGCACGUCaGGCCccugugguacaacaACCcGCGggaCGUGCg -3'
miRNA:   3'- aCGUGCAG-CCGG--------------UGGuCGCg--GCACGa -5'
13950 5' -61.7 NC_003521.1 + 72218 0.67 0.704171
Target:  5'- cUGCACGa-GGCgCACU--CGCCGUGCa -3'
miRNA:   3'- -ACGUGCagCCG-GUGGucGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 86327 0.67 0.704171
Target:  5'- gGCACGUCaGCCGgguggUgAG-GCCGUGCa -3'
miRNA:   3'- aCGUGCAGcCGGU-----GgUCgCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 117055 0.67 0.704171
Target:  5'- cGCcCGaggCGGCCgcggaGCCGGCggucacGCCGUGCg -3'
miRNA:   3'- aCGuGCa--GCCGG-----UGGUCG------CGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 87739 0.67 0.704171
Target:  5'- gGCACcuUCGGCCGCCgcuacAGCGCUGaGUc -3'
miRNA:   3'- aCGUGc-AGCCGGUGG-----UCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 132464 0.67 0.704171
Target:  5'- gGCACGUuguuggccaggCGGCUGCCGaucagcGCGCaCGUGUg -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGU------CGCG-GCACGa -5'
13950 5' -61.7 NC_003521.1 + 222959 0.67 0.704171
Target:  5'- cGCACGccCGGCCGCaccgaGGUcgaGCCGcUGCUc -3'
miRNA:   3'- aCGUGCa-GCCGGUGg----UCG---CGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 7715 0.67 0.704171
Target:  5'- cGCACGUC--CCGCgUGGUGCUGUGCg -3'
miRNA:   3'- aCGUGCAGccGGUG-GUCGCGGCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.