miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 103554 0.66 0.741381
Target:  5'- gGCGCGUggUGGCCuacgacgagaCGGCGCCG-GCc -3'
miRNA:   3'- aCGUGCA--GCCGGug--------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 212701 0.66 0.741381
Target:  5'- gGCACGUgucgcgacgccUGGCCAUCAuGgGCC-UGCUg -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGU-CgCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 232979 0.66 0.741381
Target:  5'- gGC-CGUCcGCCACCcccucgucuucuGGCGCCGgaugGCc -3'
miRNA:   3'- aCGuGCAGcCGGUGG------------UCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 118051 0.66 0.732186
Target:  5'- cGCAUugcucUCGGCCGCCAuCcCCGUGCc -3'
miRNA:   3'- aCGUGc----AGCCGGUGGUcGcGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 149631 0.66 0.732186
Target:  5'- cGCugGaC-GCCGCCGGCGagGUGCUc -3'
miRNA:   3'- aCGugCaGcCGGUGGUCGCggCACGA- -5'
13950 5' -61.7 NC_003521.1 + 196039 0.66 0.732186
Target:  5'- aGCGuuUGUCGGCCuaggGCCAGCaCCG-GCc -3'
miRNA:   3'- aCGU--GCAGCCGG----UGGUCGcGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 188025 0.66 0.732186
Target:  5'- cGCagGCGUCGGaCAUCAGC-CgGUGCa -3'
miRNA:   3'- aCG--UGCAGCCgGUGGUCGcGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 127255 0.66 0.732186
Target:  5'- gGCuCGUCGGCguCCauGGCGCCcagGCg -3'
miRNA:   3'- aCGuGCAGCCGguGG--UCGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 110657 0.66 0.732186
Target:  5'- gGCACGgucaCGGCCcggucgGCCAGCGCguCGgugGCc -3'
miRNA:   3'- aCGUGCa---GCCGG------UGGUCGCG--GCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 26250 0.66 0.732186
Target:  5'- cGCACGgaa--CGCCAGCGCUGcUGCa -3'
miRNA:   3'- aCGUGCagccgGUGGUCGCGGC-ACGa -5'
13950 5' -61.7 NC_003521.1 + 220774 0.66 0.732186
Target:  5'- aGCACcaggaGGCCACCA-CGCUGcUGCUc -3'
miRNA:   3'- aCGUGcag--CCGGUGGUcGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 42630 0.66 0.732186
Target:  5'- gGC-CGUCGGCUGgCGGUGUCGacagGCUu -3'
miRNA:   3'- aCGuGCAGCCGGUgGUCGCGGCa---CGA- -5'
13950 5' -61.7 NC_003521.1 + 116107 0.66 0.732186
Target:  5'- cGUGCGcCGcccGCCugaGCCAGCGCC-UGCUg -3'
miRNA:   3'- aCGUGCaGC---CGG---UGGUCGCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 149147 0.66 0.729412
Target:  5'- --gGCGUCGGCCacggccgagGCCaggcuggcguagcuGGCGCgGUGCa -3'
miRNA:   3'- acgUGCAGCCGG---------UGG--------------UCGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 88400 0.66 0.728486
Target:  5'- gGCACGUagaGGCCGCgcucuugcacgaaGGCGCUGcGCg -3'
miRNA:   3'- aCGUGCAg--CCGGUGg------------UCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 55266 0.67 0.726632
Target:  5'- cUGCGCcuuaagcccuacaaGUCGGCCAuCCAGCaGCugcgaucugucaucCGUGCg -3'
miRNA:   3'- -ACGUG--------------CAGCCGGU-GGUCG-CG--------------GCACGa -5'
13950 5' -61.7 NC_003521.1 + 224094 0.67 0.722915
Target:  5'- cGCGCGccggCGGUCGCCGaacuCGCCGcGCa -3'
miRNA:   3'- aCGUGCa---GCCGGUGGUc---GCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 150008 0.67 0.722915
Target:  5'- cGCACGaCGacGCCACCuucaccGUGCaCGUGCg -3'
miRNA:   3'- aCGUGCaGC--CGGUGGu-----CGCG-GCACGa -5'
13950 5' -61.7 NC_003521.1 + 102333 0.67 0.722915
Target:  5'- gUGCGCGUgGG-CGCCGaCGCCGgggugGCg -3'
miRNA:   3'- -ACGUGCAgCCgGUGGUcGCGGCa----CGa -5'
13950 5' -61.7 NC_003521.1 + 156603 0.67 0.722915
Target:  5'- gUGCAgCG-CGGCCuCUcGCGCCugGUGCUg -3'
miRNA:   3'- -ACGU-GCaGCCGGuGGuCGCGG--CACGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.