miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 54317 0.7 0.495815
Target:  5'- aGCGCGUCGugcuccGUCACCAgGCGCacgGUGCa -3'
miRNA:   3'- aCGUGCAGC------CGGUGGU-CGCGg--CACGa -5'
13950 5' -61.7 NC_003521.1 + 54807 0.73 0.370265
Target:  5'- cGCaACGUCaaaaaGCCGCCgggccccagcGGCGCCGUGCa -3'
miRNA:   3'- aCG-UGCAGc----CGGUGG----------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 55266 0.67 0.726632
Target:  5'- cUGCGCcuuaagcccuacaaGUCGGCCAuCCAGCaGCugcgaucugucaucCGUGCg -3'
miRNA:   3'- -ACGUG--------------CAGCCGGU-GGUCG-CG--------------GCACGa -5'
13950 5' -61.7 NC_003521.1 + 55721 0.7 0.523243
Target:  5'- aGCAUGUCGGCgCGcagcgccucCCAGCGCgCGgGCg -3'
miRNA:   3'- aCGUGCAGCCG-GU---------GGUCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 56788 0.66 0.768429
Target:  5'- uUGCACa-UGGCCGCCcaaccGGCGUCGcGCg -3'
miRNA:   3'- -ACGUGcaGCCGGUGG-----UCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 56826 0.69 0.570148
Target:  5'- aUGCACGUCGGagcCCACgGGgG-UGUGCUa -3'
miRNA:   3'- -ACGUGCAGCC---GGUGgUCgCgGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 57182 0.66 0.75951
Target:  5'- gUGCugGaggCGGUgCugCGGCGCUGUcGCg -3'
miRNA:   3'- -ACGugCa--GCCG-GugGUCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 57387 0.74 0.312099
Target:  5'- aGgGCGUCGaucucgcGCCA-CAGCGCCGUGCg -3'
miRNA:   3'- aCgUGCAGC-------CGGUgGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 59091 0.7 0.551235
Target:  5'- aGUaACGUcaCGGCCGCCAcGCGCUGccUGCUc -3'
miRNA:   3'- aCG-UGCA--GCCGGUGGU-CGCGGC--ACGA- -5'
13950 5' -61.7 NC_003521.1 + 59367 0.69 0.598795
Target:  5'- gGCGCGcCaGCCGCUGGaCGCCGcGCa -3'
miRNA:   3'- aCGUGCaGcCGGUGGUC-GCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 60071 0.75 0.280416
Target:  5'- aGCACG-CGGU--CCAGCGCCGUGUc -3'
miRNA:   3'- aCGUGCaGCCGguGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 60595 0.74 0.340642
Target:  5'- cGCAgGUUGGCCggcugcAUCAGCGCCGUcuGCg -3'
miRNA:   3'- aCGUgCAGCCGG------UGGUCGCGGCA--CGa -5'
13950 5' -61.7 NC_003521.1 + 60802 0.67 0.683308
Target:  5'- cGCACGUUGaGCagcaccgucucCCAGaUGCCGUGCa -3'
miRNA:   3'- aCGUGCAGC-CGgu---------GGUC-GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 61003 0.67 0.682355
Target:  5'- uUGCGCGUCaccccguccagggaGGgCAgCGGCGUgGUGCg -3'
miRNA:   3'- -ACGUGCAG--------------CCgGUgGUCGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 61543 0.66 0.768429
Target:  5'- gUGCGCG-CGGCU--CAGCGCCaaGCa -3'
miRNA:   3'- -ACGUGCaGCCGGugGUCGCGGcaCGa -5'
13950 5' -61.7 NC_003521.1 + 66555 0.67 0.675672
Target:  5'- cGCGCuUCaccgaccuGGCgCGCCAGCGCaaCGUGCg -3'
miRNA:   3'- aCGUGcAG--------CCG-GUGGUCGCG--GCACGa -5'
13950 5' -61.7 NC_003521.1 + 66661 0.66 0.750492
Target:  5'- cGUGCG-CGGCCugCAG-GCCcuggagcgucacGUGCUg -3'
miRNA:   3'- aCGUGCaGCCGGugGUCgCGG------------CACGA- -5'
13950 5' -61.7 NC_003521.1 + 68423 0.67 0.713574
Target:  5'- cGCgGCGaCGGCUccGCCGGCGCCccucaaccgcGUGCc -3'
miRNA:   3'- aCG-UGCaGCCGG--UGGUCGCGG----------CACGa -5'
13950 5' -61.7 NC_003521.1 + 68720 0.69 0.5673
Target:  5'- gGCGcCGUCGGCCGCCcGCacggacuucaucacGCCGccGCUg -3'
miRNA:   3'- aCGU-GCAGCCGGUGGuCG--------------CGGCa-CGA- -5'
13950 5' -61.7 NC_003521.1 + 69517 0.68 0.631486
Target:  5'- uUGcCACGUCGGCCaccaucaucaccagcACCAGCGgaacCCGaGCg -3'
miRNA:   3'- -AC-GUGCAGCCGG---------------UGGUCGC----GGCaCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.