miRNA display CGI


Results 41 - 60 of 274 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 74113 0.76 0.245165
Target:  5'- cUGCGCGaCGcCCAUgGGCGCCGUGCa -3'
miRNA:   3'- -ACGUGCaGCcGGUGgUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 34697 0.78 0.194659
Target:  5'- cUGCGCGUCguaGGCgAagaCGGCGCCGUGCg -3'
miRNA:   3'- -ACGUGCAG---CCGgUg--GUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 120584 0.78 0.181385
Target:  5'- aUGCACGgcgCGGCCGCCGGCuccuGCCGguaGCg -3'
miRNA:   3'- -ACGUGCa--GCCGGUGGUCG----CGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 33010 0.79 0.161039
Target:  5'- cGCAgGcucUCGGCCagcuugACCAGCGCCGUGCc -3'
miRNA:   3'- aCGUgC---AGCCGG------UGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 130348 0.79 0.157225
Target:  5'- gGCucaACGUgCGGCCGCaGGCGCCGUGCg -3'
miRNA:   3'- aCG---UGCA-GCCGGUGgUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 139186 0.72 0.42618
Target:  5'- cGCAUGUUGGUCugCuccuGCcCCGUGCUg -3'
miRNA:   3'- aCGUGCAGCCGGugGu---CGcGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 99602 0.71 0.443055
Target:  5'- gGCGCGUUGGugaCCugCAGCGcCCGgcgGCg -3'
miRNA:   3'- aCGUGCAGCC---GGugGUCGC-GGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 138022 0.7 0.495815
Target:  5'- gUGCGCGUgCGucGCUGCCGGCGCaCGggGCUg -3'
miRNA:   3'- -ACGUGCA-GC--CGGUGGUCGCG-GCa-CGA- -5'
13950 5' -61.7 NC_003521.1 + 143536 0.7 0.495815
Target:  5'- cGCACG-CGcGCCGCCGGCGaCGaGCa -3'
miRNA:   3'- aCGUGCaGC-CGGUGGUCGCgGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 54317 0.7 0.495815
Target:  5'- aGCGCGUCGugcuccGUCACCAgGCGCacgGUGCa -3'
miRNA:   3'- aCGUGCAGC------CGGUGGU-CGCGg--CACGa -5'
13950 5' -61.7 NC_003521.1 + 22966 0.7 0.495815
Target:  5'- gUGCACGUCGuGCUGCUGGgGCUcUGCg -3'
miRNA:   3'- -ACGUGCAGC-CGGUGGUCgCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 150252 0.7 0.495815
Target:  5'- cGuCACGUCGGCCugCAccGCGgCCG-GCc -3'
miRNA:   3'- aC-GUGCAGCCGGugGU--CGC-GGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 53204 0.71 0.477895
Target:  5'- cGCGCGgccCGGCuCGCCcuGGCagGCCGUGCc -3'
miRNA:   3'- aCGUGCa--GCCG-GUGG--UCG--CGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 213958 0.71 0.477895
Target:  5'- cGCGgGUgGG-CGCCGGCucggGCCGUGCUa -3'
miRNA:   3'- aCGUgCAgCCgGUGGUCG----CGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 119525 0.71 0.475235
Target:  5'- gUGCGgGUaCGGguugugccgcagcaCCACCucGGCGCCGUGCg -3'
miRNA:   3'- -ACGUgCA-GCC--------------GGUGG--UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 148911 0.71 0.4603
Target:  5'- aGCGCcgccgCGGCaucgagCACCgcAGCGCCGUGCUg -3'
miRNA:   3'- aCGUGca---GCCG------GUGG--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 168987 0.71 0.45943
Target:  5'- cGCGCGUCGGUCGCgggaggcgggcgaCGGgGCCG-GCa -3'
miRNA:   3'- aCGUGCAGCCGGUG-------------GUCgCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 217042 0.71 0.451633
Target:  5'- gGC-CGUcaCGGCCAacauaaagcCCAGCGCCGUGaCg -3'
miRNA:   3'- aCGuGCA--GCCGGU---------GGUCGCGGCAC-Ga -5'
13950 5' -61.7 NC_003521.1 + 154469 0.71 0.451633
Target:  5'- cUGUugGUCaccGGCacCGCCGGCGCCG-GCa -3'
miRNA:   3'- -ACGugCAG---CCG--GUGGUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 142556 0.71 0.451633
Target:  5'- gGCuuGUCGcCCGCCAGgcuCGCCGUGCc -3'
miRNA:   3'- aCGugCAGCcGGUGGUC---GCGGCACGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.