miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 99602 0.71 0.443055
Target:  5'- gGCGCGUUGGugaCCugCAGCGcCCGgcgGCg -3'
miRNA:   3'- aCGUGCAGCC---GGugGUCGC-GGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 195821 0.71 0.451633
Target:  5'- cUGCugGUaCuGCCACUGGCaCCGUGCUu -3'
miRNA:   3'- -ACGugCA-GcCGGUGGUCGcGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 217042 0.71 0.451633
Target:  5'- gGC-CGUcaCGGCCAacauaaagcCCAGCGCCGUGaCg -3'
miRNA:   3'- aCGuGCA--GCCGGU---------GGUCGCGGCAC-Ga -5'
13950 5' -61.7 NC_003521.1 + 142556 0.71 0.451633
Target:  5'- gGCuuGUCGcCCGCCAGgcuCGCCGUGCc -3'
miRNA:   3'- aCGugCAGCcGGUGGUC---GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 154469 0.71 0.451633
Target:  5'- cUGUugGUCaccGGCacCGCCGGCGCCG-GCa -3'
miRNA:   3'- -ACGugCAG---CCG--GUGGUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 115659 0.71 0.451633
Target:  5'- gGC-CGUggCGGCCGCCcGCGCCcUGCa -3'
miRNA:   3'- aCGuGCA--GCCGGUGGuCGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 168987 0.71 0.45943
Target:  5'- cGCGCGUCGGUCGCgggaggcgggcgaCGGgGCCG-GCa -3'
miRNA:   3'- aCGUGCAGCCGGUG-------------GUCgCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 148911 0.71 0.4603
Target:  5'- aGCGCcgccgCGGCaucgagCACCgcAGCGCCGUGCUg -3'
miRNA:   3'- aCGUGca---GCCG------GUGG--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 143802 0.71 0.469056
Target:  5'- cUGCuCGUC-GCCGgCGGCGCgCGUGCg -3'
miRNA:   3'- -ACGuGCAGcCGGUgGUCGCG-GCACGa -5'
13950 5' -61.7 NC_003521.1 + 222851 0.71 0.469056
Target:  5'- cUGCGCGUUuucauCCGCCAGCGCCucUGCUg -3'
miRNA:   3'- -ACGUGCAGcc---GGUGGUCGCGGc-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 119525 0.71 0.475235
Target:  5'- gUGCGgGUaCGGguugugccgcagcaCCACCucGGCGCCGUGCg -3'
miRNA:   3'- -ACGUgCA-GCC--------------GGUGG--UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 213958 0.71 0.477895
Target:  5'- cGCGgGUgGG-CGCCGGCucggGCCGUGCUa -3'
miRNA:   3'- aCGUgCAgCCgGUGGUCG----CGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 53204 0.71 0.477895
Target:  5'- cGCGCGgccCGGCuCGCCcuGGCagGCCGUGCc -3'
miRNA:   3'- aCGUGCa--GCCG-GUGG--UCG--CGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 143536 0.7 0.495815
Target:  5'- cGCACG-CGcGCCGCCGGCGaCGaGCa -3'
miRNA:   3'- aCGUGCaGC-CGGUGGUCGCgGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 149888 0.7 0.495815
Target:  5'- cGC-CGgCGGCguCCAGCGCCGUuucGCg -3'
miRNA:   3'- aCGuGCaGCCGguGGUCGCGGCA---CGa -5'
13950 5' -61.7 NC_003521.1 + 144334 0.7 0.495815
Target:  5'- aGCACGUUGcccagcGCCGCCAGCucgGCCaUGCa -3'
miRNA:   3'- aCGUGCAGC------CGGUGGUCG---CGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 150252 0.7 0.495815
Target:  5'- cGuCACGUCGGCCugCAccGCGgCCG-GCc -3'
miRNA:   3'- aC-GUGCAGCCGGugGU--CGC-GGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 22966 0.7 0.495815
Target:  5'- gUGCACGUCGuGCUGCUGGgGCUcUGCg -3'
miRNA:   3'- -ACGUGCAGC-CGGUGGUCgCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 54317 0.7 0.495815
Target:  5'- aGCGCGUCGugcuccGUCACCAgGCGCacgGUGCa -3'
miRNA:   3'- aCGUGCAGC------CGGUGGU-CGCGg--CACGa -5'
13950 5' -61.7 NC_003521.1 + 138022 0.7 0.495815
Target:  5'- gUGCGCGUgCGucGCUGCCGGCGCaCGggGCUg -3'
miRNA:   3'- -ACGUGCA-GC--CGGUGGUCGCG-GCa-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.