miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 60071 0.75 0.280416
Target:  5'- aGCACG-CGGU--CCAGCGCCGUGUc -3'
miRNA:   3'- aCGUGCaGCCGguGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 74857 0.75 0.299501
Target:  5'- gGCGCGcCGGCCGCgGGaCGCCGcGCc -3'
miRNA:   3'- aCGUGCaGCCGGUGgUC-GCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 57387 0.74 0.312099
Target:  5'- aGgGCGUCGaucucgcGCCA-CAGCGCCGUGCg -3'
miRNA:   3'- aCgUGCAGC-------CGGUgGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 60595 0.74 0.340642
Target:  5'- cGCAgGUUGGCCggcugcAUCAGCGCCGUcuGCg -3'
miRNA:   3'- aCGUgCAGCCGG------UGGUCGCGGCA--CGa -5'
13950 5' -61.7 NC_003521.1 + 209982 0.73 0.347884
Target:  5'- cGgACGgcccagaCGGCCACCAGCGucCCGUGUUg -3'
miRNA:   3'- aCgUGCa------GCCGGUGGUCGC--GGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 123675 0.73 0.355236
Target:  5'- cGCACGaUGGCCAUCuGCGCCaGcUGCUg -3'
miRNA:   3'- aCGUGCaGCCGGUGGuCGCGG-C-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 17121 0.73 0.355236
Target:  5'- cGCACGUCGuagacguCCGCCuGCGCCG-GCg -3'
miRNA:   3'- aCGUGCAGCc------GGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 191305 0.73 0.369503
Target:  5'- cUGaGCGUCGGCCagcagacgcuGCCgcccgaauggcugGGCGCCGUGCa -3'
miRNA:   3'- -ACgUGCAGCCGG----------UGG-------------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 158234 0.73 0.370265
Target:  5'- gGCgGCGUC-GCUACCAGCGCCGUcGUc -3'
miRNA:   3'- aCG-UGCAGcCGGUGGUCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 54807 0.73 0.370265
Target:  5'- cGCaACGUCaaaaaGCCGCCgggccccagcGGCGCCGUGCa -3'
miRNA:   3'- aCG-UGCAGc----CGGUGG----------UCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 49112 0.73 0.385722
Target:  5'- gUGCGCGU-GGUgACCgcGGCGCCGcUGCUg -3'
miRNA:   3'- -ACGUGCAgCCGgUGG--UCGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 99871 0.73 0.385722
Target:  5'- cGCAUGgCGGCCACCgucuccauguaGGgGUCGUGCg -3'
miRNA:   3'- aCGUGCaGCCGGUGG-----------UCgCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 71327 0.73 0.385722
Target:  5'- aGCaACGUCGGCCcaUGGCGCCGcGCUu -3'
miRNA:   3'- aCG-UGCAGCCGGugGUCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 86498 0.72 0.393609
Target:  5'- cUGCACGUCaaggagcucaaGGCCGCCGGCguGCCGccGCc -3'
miRNA:   3'- -ACGUGCAG-----------CCGGUGGUCG--CGGCa-CGa -5'
13950 5' -61.7 NC_003521.1 + 150611 0.72 0.393609
Target:  5'- cGCACGcagaccUCGGCCGagaCGGgGCCGUGUc -3'
miRNA:   3'- aCGUGC------AGCCGGUg--GUCgCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 120851 0.72 0.4016
Target:  5'- gGCAgGagcCGGCgGCC-GCGCCGUGCa -3'
miRNA:   3'- aCGUgCa--GCCGgUGGuCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 125555 0.72 0.4016
Target:  5'- cGCgaACGacgCGGCuCGCCugacggAGCGCCGUGCUg -3'
miRNA:   3'- aCG--UGCa--GCCG-GUGG------UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 137504 0.72 0.409694
Target:  5'- cGC-CGUCGGCC-CCGGC-CgGUGCg -3'
miRNA:   3'- aCGuGCAGCCGGuGGUCGcGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 139186 0.72 0.42618
Target:  5'- cGCAUGUUGGUCugCuccuGCcCCGUGCUg -3'
miRNA:   3'- aCGUGCAGCCGGugGu---CGcGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 138359 0.71 0.442203
Target:  5'- aGCACGcagaccUCGGCCugggaggGCCAGCGCCucaGCUg -3'
miRNA:   3'- aCGUGC------AGCCGG-------UGGUCGCGGca-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.