miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 188025 0.66 0.732186
Target:  5'- cGCagGCGUCGGaCAUCAGC-CgGUGCa -3'
miRNA:   3'- aCG--UGCAGCCgGUGGUCGcGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 149631 0.66 0.732186
Target:  5'- cGCugGaC-GCCGCCGGCGagGUGCUc -3'
miRNA:   3'- aCGugCaGcCGGUGGUCGCggCACGA- -5'
13950 5' -61.7 NC_003521.1 + 30073 0.66 0.75951
Target:  5'- gUGC-CGUccccgcCGGCCGCucacgguagCAGCGCCGaggGCUg -3'
miRNA:   3'- -ACGuGCA------GCCGGUG---------GUCGCGGCa--CGA- -5'
13950 5' -61.7 NC_003521.1 + 149147 0.66 0.729412
Target:  5'- --gGCGUCGGCCacggccgagGCCaggcuggcguagcuGGCGCgGUGCa -3'
miRNA:   3'- acgUGCAGCCGG---------UGG--------------UCGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 109900 0.66 0.768429
Target:  5'- gGCGCGggGGUaggaCAGCGUCGUGUUg -3'
miRNA:   3'- aCGUGCagCCGgug-GUCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 212701 0.66 0.741381
Target:  5'- gGCACGUgucgcgacgccUGGCCAUCAuGgGCC-UGCUg -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGU-CgCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 42630 0.66 0.732186
Target:  5'- gGC-CGUCGGCUGgCGGUGUCGacagGCUu -3'
miRNA:   3'- aCGuGCAGCCGGUgGUCGCGGCa---CGA- -5'
13950 5' -61.7 NC_003521.1 + 222023 0.66 0.749585
Target:  5'- aGCAC-UUGGCCACgcgaaagCAGCGCUG-GCc -3'
miRNA:   3'- aCGUGcAGCCGGUG-------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 81072 0.66 0.75951
Target:  5'- aGCACGUCGcCCAUgaAGCGCgCG-GCg -3'
miRNA:   3'- aCGUGCAGCcGGUGg-UCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 29445 0.66 0.777241
Target:  5'- aGCGCGUgGGCCAguucaugauCC-GCGaCCG-GCUg -3'
miRNA:   3'- aCGUGCAgCCGGU---------GGuCGC-GGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 127854 0.66 0.768429
Target:  5'- aGCcCGUCGGgcagguugcCCACCAggaugcGCGgCGUGCa -3'
miRNA:   3'- aCGuGCAGCC---------GGUGGU------CGCgGCACGa -5'
13950 5' -61.7 NC_003521.1 + 127318 0.66 0.777241
Target:  5'- aUGUugGCGUUGGUCAgCGGCuGCCGgucgGCc -3'
miRNA:   3'- -ACG--UGCAGCCGGUgGUCG-CGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 118051 0.66 0.732186
Target:  5'- cGCAUugcucUCGGCCGCCAuCcCCGUGCc -3'
miRNA:   3'- aCGUGc----AGCCGGUGGUcGcGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 26250 0.66 0.732186
Target:  5'- cGCACGgaa--CGCCAGCGCUGcUGCa -3'
miRNA:   3'- aCGUGCagccgGUGGUCGCGGC-ACGa -5'
13950 5' -61.7 NC_003521.1 + 66661 0.66 0.750492
Target:  5'- cGUGCG-CGGCCugCAG-GCCcuggagcgucacGUGCUg -3'
miRNA:   3'- aCGUGCaGCCGGugGUCgCGG------------CACGA- -5'
13950 5' -61.7 NC_003521.1 + 140197 0.66 0.768429
Target:  5'- aGCGCuccuggaucUUGGCgGCCgAGuCGCCGUGCa -3'
miRNA:   3'- aCGUGc--------AGCCGgUGG-UC-GCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 226055 0.66 0.768429
Target:  5'- aGCACcUCGGCCACgAaggcGCGCCccgGCc -3'
miRNA:   3'- aCGUGcAGCCGGUGgU----CGCGGca-CGa -5'
13950 5' -61.7 NC_003521.1 + 116107 0.66 0.732186
Target:  5'- cGUGCGcCGcccGCCugaGCCAGCGCC-UGCUg -3'
miRNA:   3'- aCGUGCaGC---CGG---UGGUCGCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 150772 0.66 0.777241
Target:  5'- aGCGCGUCGGCgucCCGGaGCUGgagGCc -3'
miRNA:   3'- aCGUGCAGCCGgu-GGUCgCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 42607 0.66 0.750492
Target:  5'- -uUACcaCGGCCGCCggcGGCGCCGUcGCc -3'
miRNA:   3'- acGUGcaGCCGGUGG---UCGCGGCA-CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.