miRNA display CGI


Results 41 - 60 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 153896 0.66 0.768429
Target:  5'- aGCGCG-CGGUaggggaaCAGCGCCGcgUGCa -3'
miRNA:   3'- aCGUGCaGCCGgug----GUCGCGGC--ACGa -5'
13950 5' -61.7 NC_003521.1 + 120038 0.66 0.750492
Target:  5'- aGCugGUCGcGCuCGCCcaccGCGCaGUGCc -3'
miRNA:   3'- aCGugCAGC-CG-GUGGu---CGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 81072 0.66 0.75951
Target:  5'- aGCACGUCGcCCAUgaAGCGCgCG-GCg -3'
miRNA:   3'- aCGUGCAGCcGGUGg-UCGCG-GCaCGa -5'
13950 5' -61.7 NC_003521.1 + 87921 0.66 0.75951
Target:  5'- -cCugGcUGGCCGCC-GCGCCGgGCa -3'
miRNA:   3'- acGugCaGCCGGUGGuCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 39439 0.66 0.75951
Target:  5'- cGC-UGcCGGCCGagcCCGGCGCCGaggGCc -3'
miRNA:   3'- aCGuGCaGCCGGU---GGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 30073 0.66 0.75951
Target:  5'- gUGC-CGUccccgcCGGCCGCucacgguagCAGCGCCGaggGCUg -3'
miRNA:   3'- -ACGuGCA------GCCGGUG---------GUCGCGGCa--CGA- -5'
13950 5' -61.7 NC_003521.1 + 153410 0.66 0.777241
Target:  5'- gUGCAgGUgcGCCACCGGCGUgGUcaGCa -3'
miRNA:   3'- -ACGUgCAgcCGGUGGUCGCGgCA--CGa -5'
13950 5' -61.7 NC_003521.1 + 78200 0.66 0.777241
Target:  5'- cGCAgGUgGGCCGCUAcUGCC-UGCa -3'
miRNA:   3'- aCGUgCAgCCGGUGGUcGCGGcACGa -5'
13950 5' -61.7 NC_003521.1 + 149147 0.66 0.729412
Target:  5'- --gGCGUCGGCCacggccgagGCCaggcuggcguagcuGGCGCgGUGCa -3'
miRNA:   3'- acgUGCAGCCGG---------UGG--------------UCGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 222023 0.66 0.749585
Target:  5'- aGCAC-UUGGCCACgcgaaagCAGCGCUG-GCc -3'
miRNA:   3'- aCGUGcAGCCGGUG-------GUCGCGGCaCGa -5'
13950 5' -61.7 NC_003521.1 + 116107 0.66 0.732186
Target:  5'- cGUGCGcCGcccGCCugaGCCAGCGCC-UGCUg -3'
miRNA:   3'- aCGUGCaGC---CGG---UGGUCGCGGcACGA- -5'
13950 5' -61.7 NC_003521.1 + 216385 0.66 0.750492
Target:  5'- cUGC-CG-CGGCCuCC-GCGCCGcGCUc -3'
miRNA:   3'- -ACGuGCaGCCGGuGGuCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 157544 0.66 0.768429
Target:  5'- cGUACG-CGGCCGCCGuuGCcCCGgaaagGCg -3'
miRNA:   3'- aCGUGCaGCCGGUGGU--CGcGGCa----CGa -5'
13950 5' -61.7 NC_003521.1 + 61543 0.66 0.768429
Target:  5'- gUGCGCG-CGGCU--CAGCGCCaaGCa -3'
miRNA:   3'- -ACGUGCaGCCGGugGUCGCGGcaCGa -5'
13950 5' -61.7 NC_003521.1 + 28599 0.66 0.750492
Target:  5'- cGCua-UCGGCCACCGGCGguCCGcagGCc -3'
miRNA:   3'- aCGugcAGCCGGUGGUCGC--GGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 127460 0.67 0.704171
Target:  5'- gGC-CGUUGuugacgcCCGCCAGCGCCGagaUGCg -3'
miRNA:   3'- aCGuGCAGCc------GGUGGUCGCGGC---ACGa -5'
13950 5' -61.7 NC_003521.1 + 225150 0.67 0.713574
Target:  5'- uUGCGgacccaGUCGcgcaCCACCucGGCGCUGUGCUg -3'
miRNA:   3'- -ACGUg-----CAGCc---GGUGG--UCGCGGCACGA- -5'
13950 5' -61.7 NC_003521.1 + 68423 0.67 0.713574
Target:  5'- cGCgGCGaCGGCUccGCCGGCGCCccucaaccgcGUGCc -3'
miRNA:   3'- aCG-UGCaGCCGG--UGGUCGCGG----------CACGa -5'
13950 5' -61.7 NC_003521.1 + 124029 0.67 0.713574
Target:  5'- gGUGCGUcagCGGCUGCuUGGCGuuGUGCUu -3'
miRNA:   3'- aCGUGCA---GCCGGUG-GUCGCggCACGA- -5'
13950 5' -61.7 NC_003521.1 + 129216 0.67 0.713574
Target:  5'- gGCGCGUggugGGCaguCCGGCGCCGcugGCc -3'
miRNA:   3'- aCGUGCAg---CCGgu-GGUCGCGGCa--CGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.