miRNA display CGI


Results 21 - 40 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13950 5' -61.7 NC_003521.1 + 33010 0.79 0.161039
Target:  5'- cGCAgGcucUCGGCCagcuugACCAGCGCCGUGCc -3'
miRNA:   3'- aCGUgC---AGCCGG------UGGUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 33152 0.69 0.589217
Target:  5'- gGCACGgCGGCagCACCGGCGgCGcggGCg -3'
miRNA:   3'- aCGUGCaGCCG--GUGGUCGCgGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 34697 0.78 0.194659
Target:  5'- cUGCGCGUCguaGGCgAagaCGGCGCCGUGCg -3'
miRNA:   3'- -ACGUGCAG---CCGgUg--GUCGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 34782 0.68 0.61801
Target:  5'- cGCGCGUcucggcccgCGGCCGCUAccuGCGCuCGcUGCUc -3'
miRNA:   3'- aCGUGCA---------GCCGGUGGU---CGCG-GC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 35750 0.68 0.656502
Target:  5'- gGCGCcuccUCGGCgGCgGcagcuGCGCCGUGCa -3'
miRNA:   3'- aCGUGc---AGCCGgUGgU-----CGCGGCACGa -5'
13950 5' -61.7 NC_003521.1 + 36191 0.67 0.689019
Target:  5'- cGCGCGgcgggacggUGGCCGCCGauguauauaaagugcGUGCCGUgGCa -3'
miRNA:   3'- aCGUGCa--------GCCGGUGGU---------------CGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 37467 0.7 0.523243
Target:  5'- cGCGCG-CgGGCCACCguGGUGCCGcaggGCa -3'
miRNA:   3'- aCGUGCaG-CCGGUGG--UCGCGGCa---CGa -5'
13950 5' -61.7 NC_003521.1 + 39439 0.66 0.75951
Target:  5'- cGC-UGcCGGCCGagcCCGGCGCCGaggGCc -3'
miRNA:   3'- aCGuGCaGCCGGU---GGUCGCGGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 39713 0.67 0.694716
Target:  5'- --gACG-CGGCCcUCGGCGCCGgGCUc -3'
miRNA:   3'- acgUGCaGCCGGuGGUCGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 42607 0.66 0.750492
Target:  5'- -uUACcaCGGCCGCCggcGGCGCCGUcGCc -3'
miRNA:   3'- acGUGcaGCCGGUGG---UCGCGGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 42630 0.66 0.732186
Target:  5'- gGC-CGUCGGCUGgCGGUGUCGacagGCUu -3'
miRNA:   3'- aCGuGCAGCCGGUgGUCGCGGCa---CGA- -5'
13950 5' -61.7 NC_003521.1 + 42875 0.67 0.713574
Target:  5'- gGCgACGgc-GCCGCCGGCGgCCGUGgUa -3'
miRNA:   3'- aCG-UGCagcCGGUGGUCGC-GGCACgA- -5'
13950 5' -61.7 NC_003521.1 + 43425 0.7 0.551235
Target:  5'- cGUGCGgcagcaGcGCCACCAGCGC-GUGCa -3'
miRNA:   3'- aCGUGCag----C-CGGUGGUCGCGgCACGa -5'
13950 5' -61.7 NC_003521.1 + 43755 0.67 0.675672
Target:  5'- cGgAUGUUGGCCGCCgcggccagcacGGcCGCCGcGCUg -3'
miRNA:   3'- aCgUGCAGCCGGUGG-----------UC-GCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 44163 0.69 0.570148
Target:  5'- aGCGCGUCGuCCACCGGCagcaCCGguaGCg -3'
miRNA:   3'- aCGUGCAGCcGGUGGUCGc---GGCa--CGa -5'
13950 5' -61.7 NC_003521.1 + 44220 0.67 0.721984
Target:  5'- aGCAUGUCGagcagcaGCCGCCGGUGaUCGUcGCc -3'
miRNA:   3'- aCGUGCAGC-------CGGUGGUCGC-GGCA-CGa -5'
13950 5' -61.7 NC_003521.1 + 45630 0.68 0.637264
Target:  5'- cGCA-GaCGGCCACCGcCGCCG-GCUc -3'
miRNA:   3'- aCGUgCaGCCGGUGGUcGCGGCaCGA- -5'
13950 5' -61.7 NC_003521.1 + 49112 0.73 0.385722
Target:  5'- gUGCGCGU-GGUgACCgcGGCGCCGcUGCUg -3'
miRNA:   3'- -ACGUGCAgCCGgUGG--UCGCGGC-ACGA- -5'
13950 5' -61.7 NC_003521.1 + 53154 0.66 0.768429
Target:  5'- gGCGCGUaacaguacacgCGGCCGCCcuCGCCGaUGa- -3'
miRNA:   3'- aCGUGCA-----------GCCGGUGGucGCGGC-ACga -5'
13950 5' -61.7 NC_003521.1 + 53204 0.71 0.477895
Target:  5'- cGCGCGgccCGGCuCGCCcuGGCagGCCGUGCc -3'
miRNA:   3'- aCGUGCa--GCCG-GUGG--UCG--CGGCACGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.